GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001813-TA|BGIBMGA001813-PA|IPR002937|Amine oxidase
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    39   8e-04
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    34   0.022
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    30   0.36 
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    28   1.5  
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   2.6  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   4.5  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 33/168 (19%)

Query: 16  KKIKAINSTSIGVVDKIVLSFERAWWPKGLSFFGFLWDEN--------CLK--------- 58
           KK+KAI+      V K++L F+  +W   +S FG L  ++        C +         
Sbjct: 589 KKLKAIDRCHFTNVKKVILIFKTQFWEPNISIFGSLPQDSGRNFIFNDCTRFYEHPTLSV 648

Query: 59  --RVEKLP----EDVVKRKIMEILRKFLGKHFTIPEPVAMIRSDWHSNPFT-RGSYTYDN 111
             +VE +     +D+V   + ++ + +  K   I  P+  I S+W +N +T   SY   N
Sbjct: 649 FVKVEGIDFMKDDDIVNGIVSQLKKVYKPKSEAI-NPIRTIISNWENNSYTNHSSYQISN 707

Query: 112 VDAPKYPDARIHLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTG 159
           +   +  D  I L EP+ ++     V FA EA    +  ++ GA D+G
Sbjct: 708 LFLEE--DYAI-LSEPIDNT-----VFFASEAISQKNSGSIRGAFDSG 747


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 19/88 (21%), Positives = 42/88 (47%)

Query: 162 EAMSPRQMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIY 221
           EA S  Q P+    P +  +P    +P++ + P + + P    +P +  +P    +P++ 
Sbjct: 600 EAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVP 659

Query: 222 KMPLIYKMPLLYKMPLLYKMPLPDKMPL 249
           + P + + P    +P +  +P P  +P+
Sbjct: 660 EAPSVPQPPAAPVVPEVPSVPQPPAVPV 687



 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/88 (20%), Positives = 39/88 (44%)

Query: 162 EAMSPRQMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIY 221
           E  S  Q P+   +P    +P     P+  ++P + + P +  +P    +P     P++ 
Sbjct: 585 EVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVP 644

Query: 222 KMPLIYKMPLLYKMPLLYKMPLPDKMPL 249
           ++P + + P +  +P    +P P   P+
Sbjct: 645 EVPSVPQRPAVPVVPEAPSVPQPPAAPV 672



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/75 (18%), Positives = 37/75 (49%)

Query: 168 QMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPLIY 227
           ++P + + P +  +P    +P     P++ E+P + + P +  +P    +P     P++ 
Sbjct: 615 EVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVP 674

Query: 228 KMPLLYKMPLLYKMP 242
           ++P + + P +  +P
Sbjct: 675 EVPSVPQPPAVPVVP 689


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 122 IHLGEPLLDSAGKPRVLFAG---EATDPTHFSTVH 153
           ++  +PL+D  GKP +LF G      D  +++T+H
Sbjct: 684 VNKSQPLVDKLGKPEILFMGPDENTADLVNWATIH 718


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 166 PRQMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPL 225
           PR +  L  + L+D + L+      +++ +   M L Y  P +  +P+L  +  I    L
Sbjct: 118 PRAI-FLSALYLIDPIRLVTSFNYHERIVVNSHMLLFYLKPFVIALPVLIGVTCILLSFL 176

Query: 226 IYKMPLLYKMPLLYKMPLPD 245
           +YKM   +   ++Y+   PD
Sbjct: 177 VYKMNKAFGW-IMYQQHGPD 195


>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 114 APKYPDARIHLGEPLLDSAGKPRVLF-----AGEATDPTHFSTVHGATDTGYRE 162
           APKY    ++L +  +D + KP + F     A   +   HF  +H  +   YRE
Sbjct: 78  APKYAKQALNLMKVPIDGSLKPAIEFFTYVKAWPGSKMDHFKEIHNESGIDYRE 131


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 44 GLSFFGFLWDENCLKRVEKLPEDVVKRKIMEILRKFLGKHFTIPEPVAMIRSDWH 98
          G S    L++ + L  V   PE     K+++I R  +      P PV  +R  W+
Sbjct: 43 GASICEMLYESSLLAFVNISPESTRLLKLVDIKRDIVLCRIFYPSPVLSVRFTWN 97


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 94  RSDWHSNPFTRGSYTYDNVDAPKYPDARIH 123
           ++DWH    +   YT+      +YPD  +H
Sbjct: 749 KTDWHHYALSFNHYTHFTSPIRRYPDIIVH 778


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 156 TDTGYREAMSPRQMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDK 210
           T  G R      Q PL+DK  +++++  ++++       +     +LY++P L+K
Sbjct: 436 TRFGQRMLQRWLQKPLVDKENIIERLDAVEELAFNSNSQVQAIRKMLYRLPDLEK 490


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.141    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,242,840
Number of Sequences: 5004
Number of extensions: 57736
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 13
length of query: 249
length of database: 2,362,478
effective HSP length: 71
effective length of query: 178
effective length of database: 2,007,194
effective search space: 357280532
effective search space used: 357280532
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)