GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001812-TA|BGIBMGA001812-PA|IPR002937|Amine oxidase
         (245 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.28 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 4   TYDTIIVGLGPAGCTAASTLAQAGK-KILALEA 35
           +YD I+VG G A    A  L++    K+L LEA
Sbjct: 68  SYDFIVVGGGAARAVVAGRLSEVSNWKVLLLEA 100


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 174 SVGVIAKVAMSFPAKWFPDDIVYL 197
           + G +A V   F A W P  I+YL
Sbjct: 304 TAGTLAVVVGGFVACWLPFFILYL 327


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,876
Number of Sequences: 429
Number of extensions: 3282
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 245
length of database: 140,377
effective HSP length: 56
effective length of query: 189
effective length of database: 116,353
effective search space: 21990717
effective search space used: 21990717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)