Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001810-TA|BGIBMGA001810-PA|IPR001849|Pleckstrin-like,
IPR000648|Oxysterol-binding protein
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 43 8e-05
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 33 0.088
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 30 0.62
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 30 0.62
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 1.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 29 1.1
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 29 1.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.9
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 3.3
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 28 3.3
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 27 4.4
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 27 7.6
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 27 7.6
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 43.2 bits (97), Expect = 8e-05
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 46 WTKLWCVLKPGLLLLYKSPKAKSSHWVGTVLLTSCQVIERPSKKDGFCFKL 96
WTK W VL L +YK K++S+ T+LL Q +ER SK FCFKL
Sbjct: 42 WTKKWLVLSSNSLSIYKGSKSESAQ--VTLLLKDIQKVER-SKSRTFCFKL 89
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 33.1 bits (72), Expect = 0.088
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 402 FARCCSSTSDDEFQRNGDDVSRFNSTPEKYSLIDYVN-SPSANLEMVTNEKRYD 454
F SST D+++ FN TP S + + N SP+ N ++VT +K+ D
Sbjct: 192 FKETTSSTLSHGNSVEADEINSFNPTPFSSSPLHFTNSSPNPNSDIVTPDKQLD 245
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 30.3 bits (65), Expect = 0.62
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 21 LRPDSGHFHSST-PNYTGRVRGSLKSWT------KL-WCVLKPGLLLLYKSPKAKSSHWV 72
LR SG+ SS+ P + G LK WT KL W L G+L YK+ SS
Sbjct: 238 LRSYSGNRDSSSAPAVPQHMSGYLKKWTNYKSGYKLRWFTLNNGVLSYYKNQDDASSACR 297
Query: 73 GTVLLTSCQVIERPSKKDGF 92
G++ L +++ P + F
Sbjct: 298 GSINLKLARLVHDPKQPTVF 317
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 30.3 bits (65), Expect = 0.62
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 149 RCSNAMLRCSRSRPEETVASEAPATRTNISHEELEKHFNEHASKMAALSSCAS 201
R + R S+ +S ++ +ISHE+L+K +E+A A S+ +S
Sbjct: 183 RSNRGFNRSSKKDDRSFRSSSKKSSNNSISHEDLDKELDEYAMSFHAASTVSS 235
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 428 PEKYSLIDYVNSPSANLEMVTNEKRYDRLIAQNVYVAGKIVNTVIDMRN 476
PE+++ D P + + V E Y ++ + ++GKI +++M N
Sbjct: 569 PERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPN 617
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 64 PKAKSSHWVGTVLLTSCQVIERPSKKDGFCFKLYHPLEQSIWAPRGPHNETIGAVIQPLP 123
P + SS GT+ S ER + + +L+ L+ + +P + + Q
Sbjct: 185 PPSSSSLPTGTISTNSFCPYERKVQPEHVTKELHQLLQHNTPSPFDTIDLQLKNE-QVQS 243
Query: 124 TAHLIFRAPSQAAGHCWLDGLELALRCSNAM 154
L+ P Q GH W++ +E + +C M
Sbjct: 244 AGLLVSLLPHQVEGHAWMESMEQSSKCGGVM 274
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 326 DDGLLKLVTSSRKR---RSSTPGNMLRLNRSPVFRRSGARTDSENEDVPKKLLSDKRSEI 382
+DG K +S +KR P N+ + P+ R S +TD ++++ SEI
Sbjct: 23 EDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQSSEI 82
Query: 383 LCD 385
L D
Sbjct: 83 LFD 85
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/39 (25%), Positives = 26/39 (66%)
Query: 168 SEAPATRTNISHEELEKHFNEHASKMAALSSCASPLMST 206
+++ +TRT+++H++ K + H S+ ++ +S ++ST
Sbjct: 1316 ADSSSTRTSLAHQDSRKSLHRHLSRSSSRASKKPSIVST 1354
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 28 FHSSTPNYTGRVRGSLKSWTKLWCVLKPGLLLLYKSPKAK-SSHW 71
F S PN R+R ++ +LWC LY+S + K S W
Sbjct: 68 FQSKQPNDLTRIRKAIAEQLQLWCQACQENADLYRSQQRKLKSRW 112
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 3.3
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 317 RDVKMSPSLDDGLLKLVTSSRKRRSSTPGNMLRLNRSPVFRRSGARTDSENEDVPKKLLS 376
RD+K+ D G KL T R+S + L ++ + V S + N D K +LS
Sbjct: 573 RDLKVFA--DYGSDKLPTVEESLRNSPKPDTLWIHLT-VIGHSLVQDSIVNGDFEKAVLS 629
Query: 377 DKRSEILCDTPD 388
K E+LC+ D
Sbjct: 630 AKEMEVLCENND 641
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 394 RTAPSVERFARCCSSTSDDEFQRNGDDVSRFNSTP 428
++ P + F++ S +E NGDD NSTP
Sbjct: 603 KSNPDLNSFSKELFSRGTNELLNNGDDTQSGNSTP 637
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 56 GLLLLYKSPKAKSSHWVGTVLLTSCQVIERPSKKDGFCFKLYHPLEQSIWAPRGPHN 112
G++ + P A + VG L C V+ RP+ + F L + P G N
Sbjct: 164 GIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALAKLAERAGVPAGVLN 220
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 405 CCSSTSDDEFQRNGDDVSRFNSTPEKYSL-IDYVNSPSANLEMVTNEKRYDRLIAQNVYV 463
C S++SDDE D + N T + L I++ +S ++L + D + YV
Sbjct: 227 CSSNSSDDEMDSENDYEAMVNRTVAENGLEIEFSDSSDSSLSAEYRSESEDHVTDSPAYV 286
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,224
Number of Sequences: 5004
Number of extensions: 84822
Number of successful extensions: 232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 13
length of query: 478
length of database: 2,362,478
effective HSP length: 75
effective length of query: 403
effective length of database: 1,987,178
effective search space: 800832734
effective search space used: 800832734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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