Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001810-TA|BGIBMGA001810-PA|IPR001849|Pleckstrin-like,
IPR000648|Oxysterol-binding protein
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 34 0.29
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 31 2.0
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653... 30 3.5
11_04_0120 + 13669467-13670384 30 4.7
01_06_1395 + 37010446-37010895 29 6.1
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 29 8.1
05_01_0327 - 2565574-2565654,2566037-2566099,2566511-2566591,256... 29 8.1
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 29 8.1
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 33.9 bits (74), Expect = 0.29
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 45 SWTKLWCVLKPGLLLLYKSP 64
SW K+W VLKPG L L K P
Sbjct: 302 SWQKVWVVLKPGFLALLKDP 321
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 31.1 bits (67), Expect = 2.0
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 310 ITKSNSGRDVKMSPSLDDGLLKLVTSSRKRRSSTPGNMLRLNRSPVFRRS----GARTDS 365
I+ S R + S S K V+ S RRS + ++RSPV RRS ART S
Sbjct: 466 ISMSPQRRSARRSKSRSPLREKSVSMS-PRRSMSKSLPRSVSRSPVARRSRSPVKARTRS 524
Query: 366 ENEDVPKKLLSDKRSEILCDTPDNILITRTAPSVERFARCCSSTS 410
+ + L RS L +P ++R+ P++++ R S TS
Sbjct: 525 ISRSSARSLQRRSRSRSLERSPVRKSVSRSPPTMDK-GRSISRTS 568
>11_04_0305 -
16162063-16162096,16162282-16164365,16165283-16165351,
16168317-16169288,16169548-16169650,16170427-16170509
Length = 1114
Score = 30.3 bits (65), Expect = 3.5
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
Query: 310 ITKSNSGRDVKMSPSLDDGLLKLVTSSRKRRSSTPGNMLRLNRSPVFRRSGARTDSENED 369
I K N D + +KL + + RR+++P ++ SPV RSG D ED
Sbjct: 162 IKKLNQSLDSICKTGAEFSFMKL-EAYQDRRTASP--LISRTTSPVLERSGVVGDQIEED 218
Query: 370 VPK--KLLSDKRSEILCDTPDNILITRTAPSVERFARCCSSTSDDEFQRNGDDVSRFNST 427
KLL+D + I + +L + + + +DD Q D + S
Sbjct: 219 TSALVKLLTDDKETIHAENNSLLLAIVGVGGIGKTTLAKNIFNDDAIQEKFDK-KIWLSV 277
Query: 428 PEKYSLIDYVNS 439
+K++ D + S
Sbjct: 278 TQKFNEPDLLRS 289
>11_04_0120 + 13669467-13670384
Length = 305
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 406 CSSTSDDEFQRNGDDVSRFNSTP 428
CSS +D+ R+GDDVS + TP
Sbjct: 19 CSSMKNDDGDRDGDDVSSASETP 41
>01_06_1395 + 37010446-37010895
Length = 149
Score = 29.5 bits (63), Expect = 6.1
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 43 LKSWTKLWCVLKPGLLLLYK-SPKAKSSHWVGTVLLTSCQVIE--RPSKKDGFCFKLYHP 99
+K+W + W VLK G L +K S ++S G + + +C ++ + F F+L P
Sbjct: 35 IKTWRRRWFVLKQGRLFWFKDSGVTRASVPRGVIPVATCLTVKGAEDTLNRQFAFELSTP 94
Query: 100 LE 101
E
Sbjct: 95 AE 96
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 29.1 bits (62), Expect = 8.1
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 287 KSLASSPYRLEALKKSPILK--CFDITKSNSGRD--VKMSPSLD--DGLLKLVTSSRKRR 340
K L + Y A+ K +L+ C D+ + + R V LD D L K + RKRR
Sbjct: 359 KLLNTEYYTQPAMVKLELLRALCDDVLEIEAIRSEVVSRMSELDGNDELCKSTRTRRKRR 418
Query: 341 SSTPGNMLRLNRSPVFRRSGARTDSENED 369
+S N+L +R+P + T+ N D
Sbjct: 419 ASAVKNLLNSSRAP---EDSSDTEDGNSD 444
>05_01_0327 -
2565574-2565654,2566037-2566099,2566511-2566591,
2566710-2566787,2566892-2566984,2567108-2567225,
2567568-2567695,2567808-2568083,2568763-2568917,
2568997-2569140,2569427-2569844
Length = 544
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 171 PATRTNISHEELEKHFNEHASKMAALSSCASPL 203
P + N+ EELE+ + +A SSC+SPL
Sbjct: 65 PGKKINLEEEELEEERMPLEDEASACSSCSSPL 97
>02_05_0939 +
32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 29.1 bits (62), Expect = 8.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 176 NISHEELEKHFNEHASKM 193
N ++E+L++HFNEH KM
Sbjct: 434 NFANEKLQQHFNEHVFKM 451
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,016,924
Number of Sequences: 37544
Number of extensions: 532558
Number of successful extensions: 1259
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 8
length of query: 478
length of database: 14,793,348
effective HSP length: 85
effective length of query: 393
effective length of database: 11,602,108
effective search space: 4559628444
effective search space used: 4559628444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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