GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001810-TA|BGIBMGA001810-PA|IPR001849|Pleckstrin-like,
IPR000648|Oxysterol-binding protein
         (478 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.46 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.46 

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 0.46
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 397 PSVERFARCCSSTSDDEFQRN---GDDVSRFNSTPEKYSLIDYVNSPSANLEMVTNEKR 452
           P +E      S+ SD E  +     D+V+ +++TP  +    Y     +   +++NE R
Sbjct: 298 PEIEISQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLISNENR 356


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.46
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 319 VKMSPSLDDGLLKLVTSSRKRRSSTPGNMLRLNRSPVFRRSGARTDSENEDVPKKLLSDK 378
           +K S  L D  +K    + ++ S+ P    ++N+S   +RSG+ +   +     K     
Sbjct: 666 IKASDKLKDSRIK----TTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDSFKVSKHEEVS 721

Query: 379 RSEILCDTPDNILITRTAPSVER 401
           R+      P N+  T T+ S+++
Sbjct: 722 RTSTAGQFPTNVATTVTSMSIDQ 744


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,004
Number of Sequences: 429
Number of extensions: 5382
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 478
length of database: 140,377
effective HSP length: 60
effective length of query: 418
effective length of database: 114,637
effective search space: 47918266
effective search space used: 47918266
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)