GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001809-TA|BGIBMGA001809-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0063 - 15574855-15575143,15575398-15575602,15575746-155759...    31   1.7  
01_05_0380 - 21633505-21634563,21634626-21634677,21636263-216363...    30   3.9  

>01_04_0063 -
           15574855-15575143,15575398-15575602,15575746-15575947,
           15576038-15576613,15576623-15576786,15576826-15576928,
           15577259-15577847,15578056-15578372
          Length = 814

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 34  PKVVFTPEETPSQMNG--SPPMFKNKSNSNFEDATSPSKDFARSASAIQVAQNNERFRK- 90
           P+V    +  P++ +   +PP FK  +N    + T+PS D       I +   +   +  
Sbjct: 23  PRVAAPQKTLPTEKSAVPAPPTFKTMANKTLREFTAPSADNVAIGPQINMGDVDFDLKSS 82

Query: 91  --VSTPASSRHGLQNISSRSHLPSTPSLLGSVPEGKASRV 128
             +   AS   G  N  + +HL  T ++ G  P+    R+
Sbjct: 83  LIMMAQASPFCGKPNEDANAHLQYTYTIKGVSPDAVRLRL 122


>01_05_0380 -
           21633505-21634563,21634626-21634677,21636263-21636310,
           21636349-21637289,21638737-21638982
          Length = 781

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 14  SRRLEPFXXXXXXXVQDERNPKVVFTPEETPSQMNGSPPMFKNKSNSNFE 63
           S R   +       VQ+E  P V  +P ++P  ++ SP    N  + N E
Sbjct: 176 SARFPQYSTKERAGVQEESTPLVALSPHKSPPAVSKSPTKCYNTVSKNLE 225


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,669,212
Number of Sequences: 37544
Number of extensions: 326402
Number of successful extensions: 782
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 3
length of query: 416
length of database: 14,793,348
effective HSP length: 84
effective length of query: 332
effective length of database: 11,639,652
effective search space: 3864364464
effective search space used: 3864364464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)