GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001809-TA|BGIBMGA001809-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (416 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   4.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.8  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 316 CSIFGIASGINVGVTALVMTEMLGTERLMSSYGISLFMNGILQLIGPPIC 365
           CS    A+ I+ G    +      T  L  +  +S+F   ++ ++ P IC
Sbjct: 120 CSSHPTAAFISYGTLFFIYVHPSATFSLDLNKVVSVFYTAVIPMLNPFIC 169


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 316 CSIFGIASGINVGVTALVMTEMLGTERLMSSYGISLFMNGILQLIGPPIC 365
           CS    A+ I+ G    +  +   T  L  +  +S+F   ++ +  P IC
Sbjct: 119 CSSHPTAAFISYGTLFFIYVQPSATFSLDLNKVVSVFYTAVIPMFSPFIC 168


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 28   VQDERNPKVVFTPEETPSQMNGSPPMFKNKSNSNFEDATSPSKDFARSASAIQVAQNNER 87
            V   RN  V  +PE  P      PP   +++NS+F D+   ++         Q+   N  
Sbjct: 1845 VGSARNIPVSGSPEPPPP-----PPRNHDQNNSSFNDSKESNEISEAECDRDQLVNRNYG 1899

Query: 88   FRKVSTPASSRHGLQNISSRSHLPS 112
                     +   ++ +  R+  PS
Sbjct: 1900 VNARGKDGMTTEEMRKLIERNEAPS 1924


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 346 SYGISLFMNGILQLIGPPICGFW 368
           ++G++ F +GI  +IG   C +W
Sbjct: 469 AFGVNRFYDGIRDMIGYYPCCWW 491


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 346 SYGISLFMNGILQLIGPPICGFW 368
           ++G++ F +GI  +IG   C +W
Sbjct: 522 AFGVNRFYDGIRDMIGYYPCCWW 544


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,441
Number of Sequences: 429
Number of extensions: 3581
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 416
length of database: 140,377
effective HSP length: 59
effective length of query: 357
effective length of database: 115,066
effective search space: 41078562
effective search space used: 41078562
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)