GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001807-TA|BGIBMGA001807-PA|IPR001506|Peptidase M12A,
astacin
         (413 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   7.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 24  VVHYAINNKDYDLHSQDIIISTLTDIQKEICVKFFNTPSNYNISDGKILYINNQDRRKTC 83
           +V +A     +D   ++  I+ L     E+ +  F     Y++    IL++NNQ   +  
Sbjct: 369 IVEFAKRLPGFDKLLREDQIALLKACSSEVMM--FRMARRYDVQTDSILFVNNQPYSRDS 426

Query: 84  QN 85
            N
Sbjct: 427 YN 428


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 329 SPPSATLTDQDGVYTAYSFDSATHAPANFMSEDC 362
           +PP AT +       A +  +  H PA   + DC
Sbjct: 33  APPPATTSSGSPASVASNASAPLHIPAKRAAYDC 66


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,603
Number of Sequences: 317
Number of extensions: 4359
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 413
length of database: 114,650
effective HSP length: 58
effective length of query: 355
effective length of database: 96,264
effective search space: 34173720
effective search space used: 34173720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)