GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001807-TA|BGIBMGA001807-PA|IPR001506|Peptidase M12A,
astacin
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    32   0.17 
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    28   2.1  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   8.5  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 60  TPSNYNISDGKILYINNQDRRKTCQNERYDYTKSVVNMQIGYKCLN----RREISRIVID 115
           TP+N N    +ILY+      KT   E  DY +S  +  +GY  +N     R   R+   
Sbjct: 798 TPNNLNPIWNEILYVPIMADTKTIDLEAMDYEESGNDRSLGYASINVQKYIRNAKRLDRS 857

Query: 116 MLKASIEGTMLPINSFDLMKR 136
            L +++ GT   +N+  L  R
Sbjct: 858 ALASTVFGTS-EVNALTLTSR 877


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/47 (27%), Positives = 27/47 (57%)

Query: 145  TSTKLLSSKDRNYINAHYHHECSALTQLPAVETRRFFTNIVMNKDSE 191
            ++T+L+  K+R +I  HY    + L  LP  +T    T++ ++K+ +
Sbjct: 1049 STTELIGKKERTFIIEHYLIVLNTLELLPKEDTWILVTDMSVDKEPD 1095


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 20  WPN-GVVHYAINNKDYDLHSQDIIISTLTDIQKEICVKFFNTP 61
           WP    ++ AI+ KDY   SQ+ I  +   + ++IC  + + P
Sbjct: 318 WPELPTIYSAIHTKDYVRPSQNDISVSQISVDEKICTSYESLP 360


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 311 VTVLWNHIQKGKEHYFEKSPPSATLTDQDGVYTAYS--FDSATHAPANFMSEDCSLSAKT 368
           +T LW   ++ ++H + K  P  T  +   +YT +    +S    P  F         K 
Sbjct: 802 LTRLWLKAEQERQHNYLKDGPYVTADEAVAIYTTFVHWLESRRFQPIPFPPLSYKHDTKL 861

Query: 369 ILPVQDHLWQRTLMMGHRHDLAPCDTAIVNSVYRN 403
           ++   + L +   + G  +     + A+V   Y N
Sbjct: 862 LVLALERLKEAYSVKGRLNQSQREELALVEQAYDN 896


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 137 FQEKDTNPTSTKLLSSKDRNYINAHYHHECSALTQLPAVE 176
           ++E D N T TK+ S   R +I+AH     S + + P +E
Sbjct: 40  YEEGDPNVT-TKMKSGYPRFFISAHVKDCISIIKKFPEIE 78


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,502
Number of Sequences: 5004
Number of extensions: 84900
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 6
length of query: 413
length of database: 2,362,478
effective HSP length: 74
effective length of query: 339
effective length of database: 1,992,182
effective search space: 675349698
effective search space used: 675349698
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)