GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001807-TA|BGIBMGA001807-PA|IPR001506|Peptidase M12A,
astacin
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413...    31   1.7  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    31   1.7  
08_01_0843 - 8276619-8278991                                           29   6.8  
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657     29   9.0  
09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433     29   9.0  
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    29   9.0  

>08_01_0469 -
           4127950-4127988,4127989-4128264,4128845-4130861,
           4131134-4131987
          Length = 1061

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 183 NIVMNKDSEMYYSNKVWPLGIVMYGVEKKLRNTRYYLAIKFAMVNIQIATCVIFREIDDR 242
           +++ NK  E Y+S     +G+  +G    + NTR  L++ +  + + +  C+++  I   
Sbjct: 385 SLLANKPRE-YWSEVYNSIGLE-HGYNDDVDNTRRILSLSYYDLPLHLKPCLLYLSIFPE 442

Query: 243 DELLPKNLL 251
           D  + KNLL
Sbjct: 443 DYYIEKNLL 451


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 13/143 (9%)

Query: 183 NIVMNKDSEMYYSNKVWPLGIVMYGVEKKLRNTRYYLAIKFAMVNIQIATCVIFREIDDR 242
           +++ NK  E +  ++V+   ++ +G    + NTR  L++ +  + + +  C+++  I   
Sbjct: 394 SLLANKPQEDW--SEVYSTIVLGHGGNDDVENTRRILSLSYYDLPLHLKPCLLYLSIFPE 451

Query: 243 DELLPKNLL-W-FSTEG----NDMPALGFME-----GNQTISLESVAKGAPGHTAHTLNA 291
           D  + KNLL W +  EG       P +G  E      N+ I+   +         +    
Sbjct: 452 DYYIEKNLLIWKWIAEGFVHEKQAPGVGLFELGEGYFNELINRSMIQPVEAEDKGYVDGC 511

Query: 292 LLRALGIPMMSNRHDRDNFVTVL 314
            +  + + M+      +NFVTVL
Sbjct: 512 RVHDMVLDMICLLSFEENFVTVL 534


>08_01_0843 - 8276619-8278991
          Length = 790

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 16  RGELWPNGVVHYAINNKDYDLHSQDIIISTLTDIQKEICVKFFNTPSNYNISDGKILYIN 75
           RG L P    + AI  K  D++S  +++  +   +K + +K        NIS+    Y+ 
Sbjct: 668 RGYLAPEWSKNTAITVK-VDIYSFGVMLLEIISCRKSMALKLAG--EECNISEWAYEYMF 724

Query: 76  NQDRRKTCQNERYDYTKSVVNMQIGYKCLNRREISRIVIDMLKASIEGTM 125
           + + ++    +  D  +    ++IG  C     ++R V+  +   +EG++
Sbjct: 725 SGEMKEVAAGKGVDEVELERMVKIGIWCTQNEPVTRPVMKSVVQMMEGSV 774


>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
          Length = 922

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 212 LRNTRYYLAIKFAMVNIQIATCVIFREIDDRDELLPKN-LLW-FSTEG--NDMPALGFME 267
           + NTR  L+  +  + + + TC++   I   D L+ K+ L+W +  EG   +    G  E
Sbjct: 401 VHNTRKILSFSYYDLPLYLKTCMLHLSIYPEDHLIEKDCLIWKWVAEGFIREEQGKGLFE 460

Query: 268 GNQTISLESVAKGAPGHTAHTL 289
             +   +E + K     T  TL
Sbjct: 461 TRERYFIELINKSMIQPTEQTL 482


>09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433
          Length = 210

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 342 YTAYSFDSATHA---PANFMSEDCSLSA 366
           + A++  +ATHA   PA F+S DC L A
Sbjct: 7   FAAFALSAATHAVGQPAGFLSIDCGLEA 34


>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
            26901025-26901247,26901662-26901666,26901796-26901924,
            26902697-26902894,26903138-26903356,26903461-26903699,
            26903797-26903888,26904009-26904224,26904327-26904554,
            26904631-26904722,26904806-26904899,26905475-26905567,
            26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 85   NERYDYTKSVVNMQIGYKCLNRREI-SRIVIDMLKASIEG 123
            NE YDY    V  ++G  CL+  +I S +VI ++   +EG
Sbjct: 1273 NEEYDYASQSVIDRLGLGCLSEEKIASCLVIFLVADDMEG 1312


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,771,964
Number of Sequences: 37544
Number of extensions: 472856
Number of successful extensions: 1012
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 8
length of query: 413
length of database: 14,793,348
effective HSP length: 84
effective length of query: 329
effective length of database: 11,639,652
effective search space: 3829445508
effective search space used: 3829445508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)