GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001807-TA|BGIBMGA001807-PA|IPR001506|Peptidase M12A,
astacin
         (413 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.89 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   6.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.3  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.4 bits (53), Expect = 0.89
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 72  LYINNQDRRKTCQNE-RYDYTKSVVNMQIGYKCLNRREISRIVIDMLKASIEGTML 126
           +Y+N+ D     ++  R    + V N +   KCL  ++ SR VID +K  I   M+
Sbjct: 79  VYLNDTDMDMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSRCVIDYVKFHITQYMI 134


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 230 IATCVIFREIDDRDELLPKNL 250
           + + V+F  +D RDEL P+ L
Sbjct: 413 VESSVLFPSLDSRDELHPREL 433


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 74  INNQDRRKTCQNERYDYTKSVVNMQIGYK 102
           I+N +  K   N +Y+Y  +  N ++ YK
Sbjct: 90  IHNNNNYKYNYNNKYNYNNNNYNKKLYYK 118


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 191 EMYYSNKVWPLGIVMYGVEKKLRNTRYYLAIKFAMVN 227
           + Y+S  ++ L I     ++KL+N   + A++FA  N
Sbjct: 3   QFYFSAILFLLAISDSQAQEKLKNIYSWKALEFAFPN 39


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 246 LPKNLLWFSTEGNDMPALG 264
           +P NL W    GN + +LG
Sbjct: 569 IPGNLKWLDIHGNFIESLG 587


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 120 SIEGTMLPINSFDLMKRFQEKDT 142
           +I+G  LP +  DL++    KDT
Sbjct: 350 TIDGIFLPKHPLDLLREADFKDT 372


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 120 SIEGTMLPINSFDLMKRFQEKDT 142
           +I+G  LP +  DL++    KDT
Sbjct: 350 TIDGIFLPKHPLDLLREADFKDT 372


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,993
Number of Sequences: 429
Number of extensions: 5648
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 413
length of database: 140,377
effective HSP length: 59
effective length of query: 354
effective length of database: 115,066
effective search space: 40733364
effective search space used: 40733364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)