Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001806-TA|BGIBMGA001806-PA|IPR000086|NUDIX hydrolase
         (227 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-5|CAB02106.1|  227|Caenorhabditis elegans Hypothetical pr...   310   6e-85
Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protei...    27   8.4  

>Z79755-5|CAB02106.1|  227|Caenorhabditis elegans Hypothetical
           protein F43G9.5 protein.
          Length = 227

 Score =  310 bits (761), Expect = 6e-85
 Identities = 137/193 (70%), Positives = 160/193 (82%)

Query: 34  NRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPH 93
           NR+IN+YPLTNYTFGTK+   EKD SVP RF+RM++E+  +GMRRSVE VL+VHEH LPH
Sbjct: 31  NRTINVYPLTNYTFGTKDAQAEKDKSVPERFKRMKDEYEVMGMRRSVEAVLIVHEHSLPH 90

Query: 94  VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNF 153
           +LLLQ+GT F+KLPGGEL  GEDEI G+ RLL ETLGR DG   EW IED IGNWWRPNF
Sbjct: 91  ILLLQIGTTFYKLPGGELELGEDEISGVTRLLNETLGRTDGETNEWTIEDEIGNWWRPNF 150

Query: 154 EPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIIS 213
           +PP+YPYIP H+TKPKEH +L LVQL  ++ F VPKN+KLVAAPLFELYDNA  YGP+IS
Sbjct: 151 DPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPLFELYDNAAAYGPLIS 210

Query: 214 SLSQSLCRFNFIY 226
           SL  +L RFNFI+
Sbjct: 211 SLPTTLSRFNFIF 223


>Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical
           protein Y48E1B.4 protein.
          Length = 611

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 128 TLGRQDGVKQEWLIEDTIGNWWRPNFEPPQ----YPYIPPHITKPKEHKRL 174
           T  R DG K  W+ +  + N+WR    P Q     P IPP +  P +  RL
Sbjct: 38  TTPRPDG-KTRWIPQYNLQNFWRRKIPPLQCGLIEPLIPPRLRSPDDFSRL 87


>Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical
           protein F10D11.5 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 19  LQHQISQNP--SMNLTLNRSINLYPLTN 44
           L+H+I   P  S+NLT+NR  N+  LTN
Sbjct: 165 LEHEIQSKPARSVNLTVNRVWNIKCLTN 192


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 1   MAAVQGPPGNKQWPARPGLQ 20
           +A ++GPPG    P  PGLQ
Sbjct: 254 VAGLEGPPGQSGLPGMPGLQ 273


>Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical
           protein R07E3.1b protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 108 GGELNPGE----DEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWW 149
           GG   P E    +E+ GL  LL    G     ++ W+++++ GN W
Sbjct: 276 GGVFTPSEYACKNEVIGLHALLITGYGTSKTGEKYWIVKNSWGNTW 321


>Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical
           protein R07E3.1a protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 108 GGELNPGE----DEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWW 149
           GG   P E    +E+ GL  LL    G     ++ W+++++ GN W
Sbjct: 330 GGVFTPSEYACKNEVIGLHALLITGYGTSKTGEKYWIVKNSWGNTW 375


>U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protein
           75 protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 4   VQGPPGNKQWPARPGLQHQISQNPSMNL 31
           + GPPG   WP  PG++    +  S  L
Sbjct: 143 IDGPPGIPGWPGEPGVRGMNGERGSTGL 170


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.140    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,183,154
Number of Sequences: 27539
Number of extensions: 269527
Number of successful extensions: 671
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 12,573,161
effective HSP length: 79
effective length of query: 148
effective length of database: 10,397,580
effective search space: 1538841840
effective search space used: 1538841840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)