GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001806-TA|BGIBMGA001806-PA|IPR000086|NUDIX hydrolase
         (227 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        28   0.069
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.5  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 0.069
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 8   PGNKQWPARPGLQHQISQNPSMNLTLNRSINLYPLTN 44
           PG+   P  P L H I+ NP  + ++  S NL PL N
Sbjct: 328 PGHSTSPNLP-LTHNIAHNPYPSHSIYPSSNLMPLNN 363


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
          protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 2  AAVQGPPGNKQWPARPGL 19
          AAVQ P G ++  ARPG+
Sbjct: 32 AAVQVPQGGRRRAARPGV 49


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.140    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,979
Number of Sequences: 317
Number of extensions: 2588
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 227
length of database: 114,650
effective HSP length: 55
effective length of query: 172
effective length of database: 97,215
effective search space: 16720980
effective search space used: 16720980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)