GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001806-TA|BGIBMGA001806-PA|IPR000086|NUDIX hydrolase
         (227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    28   0.98 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   4.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   5.2  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   5.2  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    25   6.9  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   6.9  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.9  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   9.2  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 129 LGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQ 178
           L R+  +  + +   T  + WR N EP     +  HI+  K++ ++FL++
Sbjct: 206 LAREAEIAYQMVCMATDYDCWRMNEEPVTVETVMEHISNNKDNAKIFLLE 255


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 19  LQHQISQNPSMNLTLNRSI-NLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMR 77
           + H++S    + L++  SI N+ P     F  KEP F+K   V      + +E   + + 
Sbjct: 939 ISHRVSPKQFLELSVRPSILNMEP-----FSMKEPQFKKGDEVTGFVNNVSKECVWVSLT 993

Query: 78  RSVEG 82
            SV G
Sbjct: 994 PSVNG 998


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 97   LQLG-TAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRP-NFE 154
            LQLG T      G      +D+ DG+ +++       D       I  +   W R   F 
Sbjct: 1816 LQLGGTQVMHRNGISHLTSQDDFDGISKIVNWISYIPDKRNNPVPISPSSDTWDRDVEFY 1875

Query: 155  PPQYPYIPPHITKPKEHKRLFLVQLQDRALF 185
            P Q  Y P  +   KE +  FL  L D+  F
Sbjct: 1876 PSQNGYDPRWLIAGKEDEDSFLYGLFDKGSF 1906


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 17  PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARF-QRMREEFCKIG 75
           P L+ +    P+  +  NRS+  +  ++YT  +   ++E +   PAR    + +EF ++ 
Sbjct: 77  PMLRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEGDYPARTGNEIIDEFDQLN 136

Query: 76  MRRSVEG 82
           ++ S  G
Sbjct: 137 LQCSACG 143


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 21  HQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIG 75
           H IS + ++ +   R+  L  L+     +  PLF++D S    ++   E+ C IG
Sbjct: 389 HHISGS-AVRMAEERNTTLDKLSVSDLQSLHPLFDEDVSKVFNYEESVEKRCSIG 442


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 121 LKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQY 158
           ++RL  ET   ++  K   L+ + +     PNF+PP+Y
Sbjct: 221 IRRLNAETTVEKELPKPIDLVSEKLATSNIPNFQPPKY 258


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 7  PPGNKQWPARPGLQHQISQNPSMNLTLNRSI 37
          PPG+  W A+P       ++PS   TL + I
Sbjct: 68 PPGSPYWEAKPVSHTVFLESPSDVFTLEKPI 98


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 187 VPKNYKLVAAPLFELYDN----AQGYGP--IISSLSQSLCRFNF 224
           +  N      PLF++ +     AQGYGP  I+ + S  L  FNF
Sbjct: 383 IVNNTAAAGLPLFQILNGTTVIAQGYGPLNILGNNSVVLYNFNF 426


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,130
Number of Sequences: 5004
Number of extensions: 48014
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 2,362,478
effective HSP length: 70
effective length of query: 157
effective length of database: 2,012,198
effective search space: 315915086
effective search space used: 315915086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)