Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001806-TA|BGIBMGA001806-PA|IPR000086|NUDIX hydrolase
(227 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 246 9e-66
08_02_0586 - 19024584-19024655,19024745-19024855,19024967-190250... 148 3e-36
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959... 28 7.1
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 7.1
01_05_0356 - 21338488-21340062 28 7.1
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 246 bits (603), Expect = 9e-66
Identities = 112/189 (59%), Positives = 132/189 (69%), Gaps = 1/189 (0%)
Query: 37 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 96
+N+YPL NYTFGTKEP EKD SV RF RM+ + K GMR SVE +LLV EH PH+LL
Sbjct: 9 VNVYPLANYTFGTKEPKMEKDTSVADRFARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 68
Query: 97 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-RQDGVKQEWLIEDTIGNWWRPNFEP 155
LQ+G F KLPGG L PGE+EI+GLKR L L W + + + WWRPNFE
Sbjct: 69 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 128
Query: 156 PQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSL 215
YPY PPHITKPKE K+LF+V L +R FAVP+N KL+A PLFELYDN Q YGP+IS++
Sbjct: 129 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 188
Query: 216 SQSLCRFNF 224
Q L RF F
Sbjct: 189 PQQLSRFQF 197
>08_02_0586 -
19024584-19024655,19024745-19024855,19024967-19025053,
19025154-19025245,19025456-19025595,19025689-19025867
Length = 226
Score = 148 bits (359), Expect = 3e-36
Identities = 81/198 (40%), Positives = 111/198 (56%), Gaps = 11/198 (5%)
Query: 37 INLYPLTNYTFGTKEPLFEKDAS----VPARFQRMREEFCKIGMRRSVEGVLLVHEHGLP 92
+ +YPL Y FG ++ + R R++ F G+R SV GVLLV P
Sbjct: 23 VEIYPLCRYYFGARDVAAGGAGAGLETAADRALRLKANFAAHGLRTSVHGVLLVELFDHP 82
Query: 93 HVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL---GRQDGVK----QEWLIEDTI 145
HVLLLQ+ + F LPGG L PGE ++ GLKR L+ L G QD EW I + I
Sbjct: 83 HVLLLQVRNSSFLLPGGRLRPGEQDVQGLKRKLSTKLSVAGHQDDEDGDGDDEWQIGECI 142
Query: 146 GNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNA 205
G WWR F+ +PY+ P+ PKE +LFL++L F VP+N KL+A PL +++DNA
Sbjct: 143 GMWWRSEFDAAPFPYLLPNARAPKECIKLFLIKLPVSRQFVVPRNMKLLAVPLSQIHDNA 202
Query: 206 QGYGPIISSLSQSLCRFN 223
Q YG II+ + L +F+
Sbjct: 203 QVYGSIIAGIPNLLSKFS 220
>11_03_0071 -
9589669-9590079,9592113-9592334,9592455-9592608,
9592981-9593212,9593303-9593558,9593850-9593870
Length = 431
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 17 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFE 55
PGL + +N S+NL + N+ L Y + TK + E
Sbjct: 24 PGLNDTVFKNESLNLMSVQHQNIVKLIGYCYETKNKVVE 62
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 77 RRSVEGVLLVHEH-------GLPHVLLLQLGTAFFK----LPG--GELNPGEDEIDGLKR 123
RR++ G+L EH G H LL +LGT + L G GEL +DE++ +
Sbjct: 504 RRAMNGLLTEMEHAVVSAAEGAIHTLLGKLGTIVLQEAQLLGGIRGELQHLKDELESMTA 563
Query: 124 LLTETLGRQDGVKQ 137
L + GR + KQ
Sbjct: 564 FLQDLSGRDECGKQ 577
>01_05_0356 - 21338488-21340062
Length = 524
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 51 EPLFEKDASVPARFQRMREEFCKIGM-RRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGG 109
E ++ P F+ +F G RR G+ L E +P++L L L ++LP G
Sbjct: 435 ERFLAREGKAPVDFRGKEADFIPFGSGRRLCPGIPLA-ERVMPYILALMLREFEWRLPDG 493
Query: 110 ELNPGEDEI 118
++P E ++
Sbjct: 494 -VSPEELDV 501
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.140 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,433,643
Number of Sequences: 37544
Number of extensions: 314869
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 5
length of query: 227
length of database: 14,793,348
effective HSP length: 80
effective length of query: 147
effective length of database: 11,789,828
effective search space: 1733104716
effective search space used: 1733104716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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