Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001805-TA|BGIBMGA001805-PA|undefined
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 41 3e-04
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 29 0.96
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 29 0.96
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 28 1.7
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 28 1.7
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 28 2.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 2.2
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 2.9
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 27 3.9
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 5.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 5.1
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 6.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 6.8
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 9.0
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 40.7 bits (91), Expect = 3e-04
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 136 EALKQFCTEWPNLLNSEESIEKHYPLEII--SSDYCHASPSIRNPLARVVILRVQLADLK 193
E ++ E P L +S +K +I SD +S NP VV +V L
Sbjct: 85 ELYRKAAYELPGLTPYTQSFKKPADSQIFRFESDVQMSSFEKMNPKV-VVTFKVTNIPL- 142
Query: 194 LDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTACYHES 245
L++ + LVG RY+P+ DLV I++D+ + +QN ++ +LT+ ES
Sbjct: 143 LEEKQRHVLRLLVGPRYNPEEDLVRISSDKYSSALQNKYHLIKILTSLIEES 194
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 29.1 bits (62), Expect = 0.96
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 138 LKQFCTEWPNLLNSEESIEKHYPLEIISSDYCH-ASPSIRNPLARV 182
L F + P L+ S+ I + ISSD C AS +NPLA+V
Sbjct: 122 LINFSEDKPRLVWSQNRISDSFLSSTISSDACFIASIETKNPLAKV 167
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 29.1 bits (62), Expect = 0.96
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 18 NVKLWRLNSTSADSALKKGEEEEEFRVLDILKKRDK 53
NV+LWR ++S ++++ EE + LD L++R K
Sbjct: 339 NVRLWRARASSR-ASIRSTREENRLKYLDSLRERYK 373
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 4 LIKRSKSGCFNSA---CNVKLWRLNSTSADSALKKGEEEEE 41
L+KR KSG + N ++W + + + +GEEEEE
Sbjct: 165 LVKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEE 205
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 207 GDRYDPKT--DLVTITADRCPTKVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDMEYYD 264
G R P + DL + D + D+ + + HE N++DW +E D++
Sbjct: 288 GKRLSPSSNFDLNNLGGDDDLRSESSSDFESAPASILEHEPTNWDDWVQEADVTDIDSLP 347
Query: 265 WDN 267
W N
Sbjct: 348 WHN 350
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 244 ESWNFEDWEKEKTEDDMEYY-DWDNNASKRSLIDWYLRVKNELKIMNDEEYKAF 296
ESWN +W +E ++D+E+Y W+ ++ + L + ++ + EE +A+
Sbjct: 708 ESWN--EWMREVKDEDLEFYKKWEKLLNQEERL--LLLKRGDVLTFDTEELEAY 757
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 172 SPSIRNPLARVVILRVQLADLK--LDKHATDKFKRL-VGDRYDPKTDLVTITADRCPTKV 228
S + +P R + V +D + LD+ + RL + R+ P DL D C T V
Sbjct: 617 STELEDPYLRAIFAYVSNSDWRDVLDEVSLSLKDRLGIALRFLPDDDLSNYLCDLCHTTV 676
Query: 229 QNLDYVNYLLT 239
Q+ D LLT
Sbjct: 677 QSGDPEGLLLT 687
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 19 VKLWRLNSTSADSALKKGEEEEEFRVLDILKKRDKMQRRVVKRTDVQPDRIDRM 72
VK + LN T A A+K + + VLD+ ++ KM V D PD+++++
Sbjct: 216 VKGYALNCTIASQAMKTRVQNAKIAVLDMDLQKTKMALGVHVTID-DPDQLEKI 268
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 244 ESWNFEDWEKEKTEDDMEYYDWDNNASKRSLIDWYLRVKNELKIMNDEE--YKAFDISQI 301
ES + + ++++K + + +NA R+L+D L +K+ ++E KA +
Sbjct: 244 ESRDNKRFQEKKNRSERQKNKARDNARLRNLVDTALASDPRIKLFKEQEKAAKAARKWER 303
Query: 302 ENGAQYKASVSKYMNEGENPQTVQE 326
E GA+ A+ ++ E E + +E
Sbjct: 304 EAGAREAAAAAQKKKEEEERRAAEE 328
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 152 EESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYD 211
E+ I +H + II ++ H + L + V++ L + K A +FK GD+ +
Sbjct: 1051 EKYILEHCGIRIIEAELFHGYNPEKKELLQEVVIDHDLEPFEASKEAAHEFKLRHGDQVE 1110
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 5.1
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 142 CTEWPNLLNSEESIEKHYPLEIISSD-YCHASPSIRNPLARVVILRVQLADLKLDKHATD 200
C + N + S LEII SD C SIR L R +V + + LD T
Sbjct: 4594 CFNYANTASHHRSNSDIRQLEIIISDGICEDHDSIRKLLRRAQEEKVMIVFVILDNVNTQ 4653
Query: 201 KFKRLVGDR---YDPKTD 215
K ++ + YD K D
Sbjct: 4654 KKSSILDIKKVYYDTKED 4671
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 153 ESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKH 197
E+ + H L + Y H SPSI P A +L QL D L H
Sbjct: 3 EAEQVHQSLRSLVLSYAHFSPSILIP-ASQYLLAAQLRDEFLSLH 46
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 258 DDMEYYDWDNNASKRSLIDWYLRVKNELKIMNDEEYKAFD 297
++ E YDW ++ I+ YL + NDE + +F+
Sbjct: 517 NNRENYDWARWNNQTKQIECYLCYTESSNVSNDEPHPSFE 556
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 301 IENGAQYKASVSKYMNEGENPQTVQEYSIAVRKLF 335
+E+GA + + +N E P+T++ I V K+F
Sbjct: 95 VEHGATWAKLLIALLNRPETPKTLEIAMITVSKMF 129
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,145
Number of Sequences: 5004
Number of extensions: 78964
Number of successful extensions: 243
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 17
length of query: 343
length of database: 2,362,478
effective HSP length: 73
effective length of query: 270
effective length of database: 1,997,186
effective search space: 539240220
effective search space used: 539240220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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