Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001805-TA|BGIBMGA001805-PA|undefined
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1234 + 25437340-25437502,25437983-25438381,25441198-254416... 39 0.007
08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150 36 0.062
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 33 0.33
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 31 1.8
08_01_0279 - 2277487-2278161,2278513-2278662,2278749-2278843,227... 30 2.3
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669... 29 7.2
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 29 7.2
05_03_0295 - 11830767-11831309,11831820-11831951,11832322-118323... 29 7.2
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738... 29 7.2
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 29 7.2
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 28 9.5
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 9.5
>08_02_1234 +
25437340-25437502,25437983-25438381,25441198-25441615,
25442353-25442542
Length = 389
Score = 38.7 bits (86), Expect = 0.007
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 177 NPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQN 230
+P R V L V + +L L +HA + + +VG+RY+ D +TIT++R + +N
Sbjct: 281 HPKNRKVKLSVTVKELGLSRHAFRRLREVVGNRYNSGKDELTITSERFEHREEN 334
>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
Length = 383
Score = 35.5 bits (78), Expect = 0.062
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 85 PKTFHPSSVPLPIRQGYVPKGQAPPGK-KANAELMKIPNFLHLTPPV 130
P + P+ VP+P GYVP APPG +A E++K P +H PPV
Sbjct: 280 PPYYPPAFVPMPY-YGYVPVFYAPPGAVQAQHEVVK-PVAVHSKPPV 324
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 33.1 bits (72), Expect = 0.33
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 249 EDWEKEKTEDDMEYYDWDNNASKRSLIDWYLRVKNELKIMNDE---EYKAFD-ISQIENG 304
+D+ K D+ Y D DNN+ ++D R KN LK D+ + +A D + ++E
Sbjct: 404 DDFANWKDVIDLNYLDMDNNSKLEGMMD-LQRAKNILKFELDKRLMDLQAADAVQKMEEA 462
Query: 305 AQYKASVSKYMNEGENP 321
++++ V +NP
Sbjct: 463 SRFRVQVPSISTGRQNP 479
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 30.7 bits (66), Expect = 1.8
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 144 EWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFK 203
+W NL S E + K +++ + P++ + +V+L LA+ +K A K
Sbjct: 405 DWVNLQESFEKLNKQLE-KVVRVNESSTVPNMY--IKALVLLEDFLAEALANKEAKKKMS 461
Query: 204 RLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDMEYY 263
++ + A + K N Y N L+ C FED + E +DD E
Sbjct: 462 ---------SSNAKALNAMKQKLKKNNKQYEN-LIQECREHPERFEDDDVEDKDDDDETE 511
Query: 264 DWDNNASK 271
D D++A +
Sbjct: 512 DEDSDAEE 519
>08_01_0279 -
2277487-2278161,2278513-2278662,2278749-2278843,
2279367-2279865
Length = 472
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 38 EEEEFRVLDILKKRDKMQRRVVKRTDVQPDRIDRMATNQNWGNVWPGPK 86
EE E RV ++++DK +++ D D +A +W + W G +
Sbjct: 112 EEWEARVRKNIEEQDKAYEEMMRSQDDDESNWDYIAYRNSWNDTWSGSR 160
>12_01_1112 -
11866376-11866447,11866528-11866662,11866772-11866921,
11867263-11867338,11867426-11867559,11867655-11867747,
11868456-11868589,11868696-11868744,11869271-11869441,
11870291-11870452
Length = 391
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 253 KEKTEDDMEYYDWDNNASKRS-LIDWYLRVKNELKIMNDEEY 293
K + D ME D N S R+ LIDW + V E +++ D Y
Sbjct: 175 KHPSTDFMETLQKDVNPSMRAILIDWLVEVAEEYRLVPDTLY 216
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 83 PGPKTFHPSSVPLP 96
PGP FHPSS P+P
Sbjct: 283 PGPAAFHPSSRPMP 296
>05_03_0295 -
11830767-11831309,11831820-11831951,11832322-11832375,
11842285-11843169
Length = 537
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 172 SPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADR 223
SPS R L+ + + QLAD+ LD R + DR DPKT + I+ ++
Sbjct: 382 SPSHRQALSGLGL--GQLADMTLDGFEQPDLIRWLMDRTDPKTMTIQISENK 431
>01_01_0937 -
7388230-7388283,7388957-7389091,7389201-7389365,
7389436-7389516,7389692-7389767,7389855-7389988,
7390082-7390174,7390885-7391018,7391125-7391533,
7392381-7392593
Length = 497
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 253 KEKTEDDMEYYDWDNNASKRS-LIDWYLRVKNELKIMNDEEY 293
K + D ME D N S R+ LIDW + V E +++ D Y
Sbjct: 255 KRPSTDFMETIQKDVNPSMRAILIDWLVEVAEEYRLVPDTLY 296
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 253 KEKTEDDMEYYDWDNNASKRS-LIDWYLRVKNELKIMNDEEY 293
K + D ME D N S R+ LIDW + V E +++ D Y
Sbjct: 257 KRPSTDFMETIQKDVNPSMRAILIDWLVEVAEEYRLVPDTLY 298
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 72 MATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVI 131
M++ + G+ W P ++ P P+ G+VP PG P +L P +
Sbjct: 677 MSSGRGHGHAWNNPPSW-----PSPVANGFVPMQHGVPGFHPPVHQFSAPPMFNLRPQMK 731
Query: 132 KSQ 134
+Q
Sbjct: 732 LNQ 734
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/41 (29%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 31 SALKKGEEEEEFRVL-DI-LKKRDKMQRRVVKRTDVQPDRI 69
S LKK E+E R+L D+ L+++++++R++V++ ++ + +
Sbjct: 636 SVLKKSAEDERIRLLNDVKLREQERIRRQLVEKEKIEAEEL 676
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,194
Number of Sequences: 37544
Number of extensions: 460019
Number of successful extensions: 1159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 14
length of query: 343
length of database: 14,793,348
effective HSP length: 83
effective length of query: 260
effective length of database: 11,677,196
effective search space: 3036070960
effective search space used: 3036070960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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