GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001805-TA|BGIBMGA001805-PA|undefined
         (343 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.9  

>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 278 YLRVKNELKIMNDEEYKAFDISQIEN 303
           YLR +N+L+ + +E  +A ++  +EN
Sbjct: 12  YLRNRNQLQHVLEETQQALELINLEN 37


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 254 EKTEDDMEYYDWDNNASK-RSLIDWYLRVKNELKIMN 289
           E   +D++   W+N  S  R+L D Y  VKN L   N
Sbjct: 373 EYNNNDLDTKKWNNKISALRALNDLY-NVKNTLDSYN 408


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 78  WGNV-WPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVI 131
           W  V W G   +  S  P  +    + +G   PG     +    PN   L+ P +
Sbjct: 225 WKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEV 279


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 78  WGNV-WPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVI 131
           W  V W G   +  S  P  +    + +G   PG     +    PN   L+ P +
Sbjct: 278 WKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEV 332


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,093
Number of Sequences: 429
Number of extensions: 5564
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 343
length of database: 140,377
effective HSP length: 58
effective length of query: 285
effective length of database: 115,495
effective search space: 32916075
effective search space used: 32916075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)