Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001805-TA|BGIBMGA001805-PA|undefined
(343 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18240.2 68416.m02321 expressed protein 38 0.010
At3g18240.1 68416.m02320 expressed protein 38 0.010
At4g21460.1 68417.m03104 expressed protein 36 0.052
At5g17710.2 68418.m02076 co-chaperone grpE family protein simila... 33 0.21
At5g17710.1 68418.m02075 co-chaperone grpE family protein simila... 33 0.21
At1g12870.1 68414.m01495 S locus F-box-related / SLF-related con... 31 1.1
At1g70550.2 68414.m08120 expressed protein similar to hypothetic... 30 2.0
At1g70550.1 68414.m08119 expressed protein similar to hypothetic... 30 2.0
At3g45280.1 68416.m04889 syntaxin 72 (SYP72) identical to syntax... 30 2.6
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co... 29 3.4
At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to c... 29 4.5
At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3) ... 29 4.5
At1g32830.1 68414.m04046 hypothetical protein similar to At2g049... 29 4.5
At3g30540.1 68416.m03865 (1-4)-beta-mannan endohydrolase family ... 29 6.0
At3g28930.1 68416.m03613 avrRpt2-induced AIG2 protein (AIG2) ide... 29 6.0
At3g11240.1 68416.m01367 arginine-tRNA-protein transferase, puta... 29 6.0
At5g44690.1 68418.m05476 hypothetical protein 28 7.9
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 28 7.9
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 28 7.9
>At3g18240.2 68416.m02321 expressed protein
Length = 419
Score = 37.9 bits (84), Expect = 0.010
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 177 NPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQN 230
+P R V + V + +L L KH + + LVG RY D +TIT++R + +N
Sbjct: 307 HPKNRKVKMSVTVKELGLSKHQAKRLRELVGKRYHSGKDELTITSERFEHREEN 360
>At3g18240.1 68416.m02320 expressed protein
Length = 419
Score = 37.9 bits (84), Expect = 0.010
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 177 NPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQN 230
+P R V + V + +L L KH + + LVG RY D +TIT++R + +N
Sbjct: 307 HPKNRKVKMSVTVKELGLSKHQAKRLRELVGKRYHSGKDELTITSERFEHREEN 360
>At4g21460.1 68417.m03104 expressed protein
Length = 415
Score = 35.5 bits (78), Expect = 0.052
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 177 NPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQN 230
+P R V + V + +L L H + + LVG RY D +TIT +R + +N
Sbjct: 303 HPKNRKVKMSVTVKELGLSNHQAKRLRELVGKRYHSGKDELTITCERFEHREEN 356
>At5g17710.2 68418.m02076 co-chaperone grpE family protein similar
to co-chaperone CGE1 precursor isoform a [Chlamydomonas
reinhardtii] GI:15384277; contains Pfam profile PF01025:
co-chaperone GrpE
Length = 326
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 115 AELMKIPNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDY 168
A L+K P+ LHLTP ++ + K FC + N S+ + L +SS Y
Sbjct: 2 AGLLKTPS-LHLTPTLLHAPSVPFKPFCVSFAGGRNVSVSLSRRASLRSVSSGY 54
>At5g17710.1 68418.m02075 co-chaperone grpE family protein similar
to co-chaperone CGE1 precursor isoform a [Chlamydomonas
reinhardtii] GI:15384277; contains Pfam profile PF01025:
co-chaperone GrpE
Length = 324
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 115 AELMKIPNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDY 168
A L+K P+ LHLTP ++ + K FC + N S+ + L +SS Y
Sbjct: 2 AGLLKTPS-LHLTPTLLHAPSVPFKPFCVSFAGGRNVSVSLSRRASLRSVSSGY 54
>At1g12870.1 68414.m01495 S locus F-box-related / SLF-related
contains F-box domain Pfam:PF00646; contains TIGRFAM
TIGR01640: F-box protein interaction domain; weakly
similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 416
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 134 QCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCH 170
+ E K+ E L +SE++ EK Y + ++SS YCH
Sbjct: 300 ETEGDKKIIQEIWRLKSSEDAWEKIYTINLLSSSYCH 336
>At1g70550.2 68414.m08120 expressed protein similar to
hypothetical protein GB:AAD31338 [Arabidopsis thaliana]
and to putative putative carboxyl-terminal peptidase
GB:AAC16072 [Arabidopsis thaliana] contains Pfam
profile PF03080: Arabidopsis proteins of unknown
function
Length = 410
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 25 NSTSADSALKKGEEEEEFRVLDILKKRDKMQRRVVKRTDVQP-DRIDRMATNQNWGNVWP 83
NST+AD L+ EE ++ + I ++ DK+ + VK D+ID ++T+Q P
Sbjct: 28 NSTAADQTLRPQEELQKLTL--IRQELDKINKPAVKTIQSSDGDKIDCVSTHQQPAFDHP 85
Query: 84 ---GPKTFHPSSVP 94
G K P +P
Sbjct: 86 LLQGQKPLDPPEIP 99
>At1g70550.1 68414.m08119 expressed protein similar to hypothetical
protein GB:AAD31338 [Arabidopsis thaliana] and to
putative putative carboxyl-terminal peptidase
GB:AAC16072 [Arabidopsis thaliana] contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 465
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 25 NSTSADSALKKGEEEEEFRVLDILKKRDKMQRRVVKRTDVQP-DRIDRMATNQNWGNVWP 83
NST+AD L+ EE ++ + I ++ DK+ + VK D+ID ++T+Q P
Sbjct: 83 NSTAADQTLRPQEELQKLTL--IRQELDKINKPAVKTIQSSDGDKIDCVSTHQQPAFDHP 140
Query: 84 ---GPKTFHPSSVP 94
G K P +P
Sbjct: 141 LLQGQKPLDPPEIP 154
>At3g45280.1 68416.m04889 syntaxin 72 (SYP72) identical to syntaxin
of plants 72 (SYP72) (GI:13811650)[Arabidopsis
thaliana]; identified as SYP72 in Sanderfoot, A.A., et
al, Plant Physiology 124:1558-69(2000); syntaxin 8 -
Homo sapiens, EMBL:AF115323
Length = 267
Score = 29.9 bits (64), Expect = 2.6
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
Query: 162 EIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITA 221
E+ S++ A+ N R R+ +KL K A K K L + + + DLV A
Sbjct: 55 ELASTEKNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALA 114
Query: 222 DRCPTKVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDMEYYDWDNNASKRSLIDWYLRV 281
DR +Q + N + W + + DM D D+ ++S R
Sbjct: 115 DR----LQAIPDGNEHGAKQANSDWGGASAPNKNIKFDMSEEDMDDGFFQQSEESSQFRQ 170
Query: 282 KNELKIMNDEEYKAFDISQIENGAQYKASVSKYMNE 317
+ E++ +E DI I G ++++ MNE
Sbjct: 171 EYEMRRKKQDE--GLDI--ISEGLDALKNLARDMNE 202
>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
contains Pfam profile PF00276: ribosomal protein L23
Length = 178
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 109 PGKKANAELMKIPNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDY 168
P K N + + IK E+L F E N LN + +K L I +DY
Sbjct: 22 PAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVNTLNMDGKKKKRGGLLIAKADY 81
Query: 169 CHASPSIRNPLA 180
A ++R+PL+
Sbjct: 82 KKAYVTLRSPLS 93
>At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to
cyclin 3a [Arabidopsis thaliana] GI:509425; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 437
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 237 LLTACYHESWNFEDWEKEKTEDDMEYYDWDNNASKRS-LIDWYLRVKNELKIMNDEEY 293
L A ++S N + E+ + M D + + R LIDW + V E K+++D Y
Sbjct: 172 LYAASIYDSINVAELEQRPSTSYMVQVQRDIDPTMRGILIDWLVEVSEEYKLVSDTLY 229
>At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3)
family protein similar to SP|P33319 Translation
initiation factor IF-3 {Proteus vulgaris}; contains Pfam
profiles PF00707: Translation initiation factor IF-3,
C-terminal domain, PF05198: Translation initiation
factor IF-3, N-terminal domain
Length = 312
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 211 DPKTDLVTITADRCPTKVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDMEYYDWDNNAS 270
D + DLV ++ D P V+ +DY Y Y + +D +K+ T D++ N
Sbjct: 124 DAELDLVILSPDADPPVVKMMDYSKYR----YEQQKRKKDQQKKTTRMDLKELKMGYNID 179
Query: 271 KRSLIDWYLRVKNELKIMND 290
+ D+ +R++ K + D
Sbjct: 180 QH---DYSVRLRAAQKFLQD 196
>At1g32830.1 68414.m04046 hypothetical protein similar to At2g04970,
At2g15200, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 707
Score = 29.1 bits (62), Expect = 4.5
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 15/203 (7%)
Query: 14 NSACNVKLWRL--NSTSADSALKKGEEEEEFRVLDILKKRDKMQRRVVKRTDVQPDRIDR 71
+S CNV+ N D +++ E +EE +V + + D ++ VK D + D+
Sbjct: 428 HSTCNVEETEKQENPKQCDEEMEREEGKEE-KVEEHDEYNDVLKEENVKEHDEHDEIEDQ 486
Query: 72 -----MATNQNWGNVWPGPKTFHP---SSVPLPIRQGYVPKGQAPPGKKANAELMKIPNF 123
++ ++N G P K HP + +P + + + A ++ +
Sbjct: 487 EEYAILSDDENNGTA-PTEKESHPLKEKTTEVPKEETVEEHDEHDETEDQEAYVILSDDE 545
Query: 124 LHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLARVV 183
+ T P K + + K+ TE P ++ PL + S++ PL V+
Sbjct: 546 DNGTAPTEK-ESQPQKEETTEVPRETKKDDEDVNQTPLSTQEEEITQGQSSLQTPLTPVM 604
Query: 184 ILR--VQLADLKLDKHATDKFKR 204
+ + ++ DLK+ K A +K R
Sbjct: 605 LSQEVMEEIDLKVKKWAKNKLIR 627
>At3g30540.1 68416.m03865 (1-4)-beta-mannan endohydrolase family
similar to (1-4)-beta-mannan endohydrolase GI:10178872
from [Coffea arabica]
Length = 351
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 264 DWDNNASKRSLIDWYLRVKNELKIMNDEEYK 294
+WD+ K+ +DW R K E+ ND+ Y+
Sbjct: 116 NWDDYGGKKQYVDW-ARSKGEMVSSNDDFYR 145
>At3g28930.1 68416.m03613 avrRpt2-induced AIG2 protein (AIG2)
identical to SP|P54121 AIG2 protein (avrRpt2-induced
gene) {Arabidopsis thaliana}
Length = 170
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 207 GDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDME----Y 262
G Y KT V +T +V+ + + N Y E W+FE+W++ E +E +
Sbjct: 84 GTEYVRKTVEVVLTDTLEKKQVETIVWANKDDPNMYGE-WDFEEWKRLHMEKFIEAATKF 142
Query: 263 YDWDNNASKRS 273
+W N + RS
Sbjct: 143 MEWKKNPNGRS 153
>At3g11240.1 68416.m01367 arginine-tRNA-protein transferase,
putative / arginyltransferase, putative /
arginyl-tRNA-protein transferase, putative similar to
SP|Q9ZT48 Arginine-tRNA-protein transferase 1 (EC
2.3.2.8) (R-transferase 1) (Arginyltransferase 1)
(Arginyl-tRNA--protein transferase 1) {Arabidopsis
thaliana}; contains Pfam profiles PF04377:
Arginine-tRNA-protein transferase C terminus, PF04376:
Arginine-tRNA-protein transferase N terminus
Length = 605
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 281 VKNELKIMNDEEYKAFDISQIENGAQYKASVSKYMNEGENPQTVQEYSIAVRKLFGLPQK 340
VK L E+ + + Q +V K + GE P VQ +V+K+F +K
Sbjct: 141 VKKSLGAAKREKNNELEPIMKDLSEQIDNAVQKCIQSGEFPSNVQIPKASVKKVFSAKRK 200
Query: 341 KL 342
KL
Sbjct: 201 KL 202
>At5g44690.1 68418.m05476 hypothetical protein
Length = 684
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 245 SWNFEDWEKEKTED---DMEYYDWDNNASKRSLIDWYLRVKNELKIMND 290
+W+ + E E+ ED ++ YYDW ++ S+ L+ + L++MN+
Sbjct: 453 AWDENETENEENEDCNREIMYYDWISDISRPRSYWEDLKKQRVLEVMNN 501
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 264 DWDNNASKRSLIDWYLRVKNELKIMNDEEYK 294
+WD+ K+ +DW R K E+ ND+ Y+
Sbjct: 132 NWDDYGGKKQYVDW-ARSKGEVVSSNDDFYR 161
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439: Bromodomain
Length = 1210
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 60 KRTD-VQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELM 118
K TD V D + NQ+ G P P +P S G PP K+A+AE M
Sbjct: 1068 KTTDAVSIDSAADKSQNQDSGQEMPSPDAANPQSAAPSPTDGDREDQSEPPSKEASAEDM 1127
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,794,753
Number of Sequences: 28952
Number of extensions: 399811
Number of successful extensions: 1337
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 19
length of query: 343
length of database: 12,070,560
effective HSP length: 82
effective length of query: 261
effective length of database: 9,696,496
effective search space: 2530785456
effective search space used: 2530785456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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