Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001803-TA|BGIBMGA001803-PA|IPR011356|Peptidase M17,
leucyl aminopeptidase, IPR000819|Peptidase M17, leucyl aminopeptidase,
C-terminal
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21114| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   2e-11
SB_5427| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   1e-06
SB_46933| Best HMM Match : Peptidase_M17 (HMM E-Value=0.5)             31   2.9  
SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_54732| Best HMM Match : ADP_ribosyl_GH (HMM E-Value=6e-38)          29   8.9  

>SB_21114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 68.1 bits (159), Expect = 2e-11
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 399 MDNHSARATNHSTRLQFSGTRVSEPIEVSYVRPEDLAVNVGKCKGDDLLQVD---MEKTF 455
           MDN  A     +  +Q +G  + +P E+S +R ED     G+ + +D++Q +      T 
Sbjct: 64  MDNGPAAEKKSAQEIQAAGACIGDPFEISTIRREDYEFVAGRNEYEDVIQCNNAPSSGTA 123

Query: 456 RHHQLAAGFLIKVSGLEDKNV------KYTHLDIAGAAGSPPCEPTAVPILSL 502
           R HQ  A F+I+ +GL+   +       Y+H+DIAG++G  P  PTA PI+++
Sbjct: 124 RGHQFPAAFMIRAAGLDKHGIDSSQPLPYSHMDIAGSSGPYPGIPTAAPIVAM 176



 Score = 39.5 bits (88), Expect = 0.006
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 179 RVLARDIGGGDPERMSPIKIAEHLKSTFSG 208
           R++ RDIGG DPERM+  K+ E+++  F G
Sbjct: 28  RLVCRDIGGSDPERMAAPKVEEYVRQVFEG 57


>SB_5427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 275 TGGADIKISGKMXXXXXXXXXXXXXXXXXXXCSILKPPHLKVVAALCLCRNSIGEDSYVS 334
           +GG  +K S +M                    + L+ P + V     LC N +  ++   
Sbjct: 245 SGGISLKPSARMSLMKADMGGAAAVCSALVAIATLQLP-MNVTVLTPLCENMVAGNANKP 303

Query: 335 DELLLSKSGKTVRVTNTDAEGRFAMADALYKFAETAAQELNP-HLYTIATLTG 386
            +++ + +GKT+ V NTDAEGR  +ADAL       A  L+P  +  +ATLTG
Sbjct: 304 GDVITASNGKTIEVDNTDAEGRLILADAL-----CHANTLSPAAIIDVATLTG 351


>SB_46933| Best HMM Match : Peptidase_M17 (HMM E-Value=0.5)
          Length = 125

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 257 PARISETLLLVGKGVTYDTGGADIK 281
           PA  + ++   GKG+ YDTGG  IK
Sbjct: 99  PAGATRSIAWCGKGIVYDTGGLSIK 123


>SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 17  NLQSADYDAVILILYPEELNVPLPRHIG 44
           N    D D V+++LYP E+   L RH G
Sbjct: 462 NADKRDIDKVLVLLYPREIEEMLERHDG 489


>SB_54732| Best HMM Match : ADP_ribosyl_GH (HMM E-Value=6e-38)
          Length = 342

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 89  RVVKEAAYKGMTRALDAGAKRPLLVVQNVVDFPDGQLVAILGALEALYV-PLQMRERDST 147
           R+   A Y      L   A+R  L+  + V   +G ++      EAL+V P  + +    
Sbjct: 135 RIAPIALYSTDLTMLKEYARRSALITHSHVKGVNGAILQACAVFEALHVNPTTLEKNTFI 194

Query: 148 RNFSRIGLHAEEKRTEN 164
            N  +  +  EE +T+N
Sbjct: 195 DNLIKTAVELEESQTDN 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,619,466
Number of Sequences: 59808
Number of extensions: 590859
Number of successful extensions: 1124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 6
length of query: 510
length of database: 16,821,457
effective HSP length: 85
effective length of query: 425
effective length of database: 11,737,777
effective search space: 4988555225
effective search space used: 4988555225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)