GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001803-TA|BGIBMGA001803-PA|IPR011356|Peptidase M17,
leucyl aminopeptidase, IPR000819|Peptidase M17, leucyl aminopeptidase,
C-terminal
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    64   4e-11
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    29   1.2  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 64/243 (26%), Positives = 100/243 (41%), Gaps = 16/243 (6%)

Query: 245 PRVVEIEYKPSDPARISETLLLVGKGVTYDTGGADIKISGKMXXXXXXXXXXXXXXXXXX 304
           PR +E++Y   + ++    L LVGKGVT+D+GG  IK S  M                  
Sbjct: 256 PRFLEVQYIGKEKSKDDGWLGLVGKGVTFDSGGISIKPSQNMKEMRADMGGAAVMLSSIY 315

Query: 305 XCSILKPPHLKVVAALCLCRNSIGEDSYVSDELLLSKSGKTVRVTNTDAEGRFAMADALY 364
               L  P +  V    L  N     +    +++  ++G +V + NTDAEGR  +ADA++
Sbjct: 316 ALEQLSIP-VNAVFVTPLTENLPSGSAAKPGDVIFMRNGLSVEIDNTDAEGRLILADAVH 374

Query: 365 KFAETAAQELNPHLYTIATLTGHARACYGN-YVAAMDNHSARATNHSTRLQFSGTRV-SE 422
                ++Q     +   +TLTG      GN +  A         N  T    +G      
Sbjct: 375 ---YVSSQYKTKAVIEASTLTGAMLVALGNVFTGAFVQGEELWKNLETASHDAGDLFWRM 431

Query: 423 PIEVSYVRPEDLAVNVGKCKGDDLLQVDMEKTFRHHQLAAGFLIKVSGLEDKNVKYTHLD 482
           P   +Y++    + N   C        ++ +       AA F IK   L  K++ + HLD
Sbjct: 432 PFHEAYLKQLTSSSNADLC--------NVSRAGGGCCTAAAF-IKCF-LAQKDLSFAHLD 481

Query: 483 IAG 485
           IAG
Sbjct: 482 IAG 484


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 398 AMDNHSARATNHSTRLQFSGTRVSEPI--EVSYVRPEDLAVNVGKCKGDDLLQVDMEKTF 455
           AM++HS RA   ST  + S    ++ +  E S   PED        + D+ L++  EKT 
Sbjct: 639 AMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRLRAEKTL 698

Query: 456 RHHQLAAGFLI 466
             + L+  F +
Sbjct: 699 VENALSENFTL 709


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,449
Number of Sequences: 5004
Number of extensions: 81930
Number of successful extensions: 151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 3
length of query: 510
length of database: 2,362,478
effective HSP length: 76
effective length of query: 434
effective length of database: 1,982,174
effective search space: 860263516
effective search space used: 860263516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)