GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001802-TA|BGIBMGA001802-PA|undefined
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    32   0.24 
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    31   0.55 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   1.3  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    29   1.7  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    29   2.2  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   5.1  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    27   6.7  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   8.9  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   8.9  

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 437 TPSVSHAQVNRTVNNISAAHVSPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVV 496
           T S S  Q   T  ++SA+H   +P    + E + N  +   + +  ++ Y        V
Sbjct: 89  TQSTSRGQEATTSPSLSASH--EKPARPQTGEGSDNEDEDEDIDALIEDLYSQDQEEEQV 146

Query: 497 RRVQATSPKRDAQTDKSDQIQPKPIWKRGLTEFSLLTRLRAFGQSRRQESPTRN 550
              ++  P   A+    + ++  P  K GLTE  +  R + +G ++ +E  T N
Sbjct: 147 EEEESPGPAGAAKVVPEELLETDP--KYGLTESEVEERKKKYGLNQMKEEKTNN 198


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 4/119 (3%)

Query: 457 VSPEPISLTSS--EVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQTDKSD 514
           ++P PIS+ S+  E  + +L    +RS+    Y N   +   + +QA +   +  TD  D
Sbjct: 431 INPNPISMPSNLIETMQRILRGMELRSYQPGKYNNPSLQWHYKVLQALALDEEIPTDFVD 490

Query: 515 QIQP--KPIWKRGLTEFSLLTRLRAFGQSRRQESPTRNENGNDRNPLTSPVKVVRRSRP 571
              P  K I KR       +  + A  ++   +     E   D+ P+    ++ +  +P
Sbjct: 491 NTLPKYKAIQKRVGEYMGDVNNIVAEYRNDISDKNGIKEEEEDQGPIVKKARIEKSGKP 549


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/46 (39%), Positives = 22/46 (47%)

Query: 438 PSVSHAQVNRTVNNISAAHVSPEPISLTSSEVNRNVLDAHIVRSHS 483
           P  S    NR  +      VSP+P S T S +    LDA I+R HS
Sbjct: 472 PPPSSINSNRAASPFRPTSVSPQPSSPTKSLLFGARLDAIILREHS 517


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 534 RLRAFGQSRRQESPTRNENGNDRNPLTSPVKVVRRSRPEAREGVR-RRSNSLSNETVNSA 592
           R+R      R  + T  EN +  NP ++      RS P A EG      N+ S +    +
Sbjct: 228 RIRFILAPNRSATNTPVENTHPENPDSNTSTPTTRSEPLAGEGASIDAENASSRQETTPS 287

Query: 593 EPRPGTL 599
           + RP TL
Sbjct: 288 DSRPSTL 294


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/56 (21%), Positives = 28/56 (50%)

Query: 464 LTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQTDKSDQIQPK 519
           +T  E N +V +  +V       YE +PR+V + + +    ++  +T    +++P+
Sbjct: 10  VTVEEKNNDVTEKILVEGEKSKEYEETPRKVKIVKRKKQPARKQIETRPEYEMEPE 65


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/63 (25%), Positives = 26/63 (41%)

Query: 536 RAFGQSRRQESPTRNENGNDRNPLTSPVKVVRRSRPEAREGVRRRSNSLSNETVNSAEPR 595
           + FG+ R + S   +   +  N   SP  ++ R     R    R ++SLS    +   P 
Sbjct: 675 QVFGEQRTENSARESLRHSRSNMSRSPSPMLSRRSSTLRPSFERSASSLSVRQSDVVSPA 734

Query: 596 PGT 598
           P T
Sbjct: 735 PST 737


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/37 (37%), Positives = 15/37 (40%)

Query: 290 VQNTNDYGTVFNDYGHVSTMTSVSLTAVNQNDAYERL 326
           V N  DYG    DY H  T     +T    N A  RL
Sbjct: 11  VSNVKDYGKRIIDYAHEKTSNPQPVTVHTTNSAKGRL 47


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 4/136 (2%)

Query: 429 VSIAQITSTPSVSHAQVNRTVNNISAAHVSPEPISLTSSEVNR-NVLDAHIVRSHSQNAY 487
           + I Q  + P   +   +   N    A  + + ++ T S+  R  V     VRS S+   
Sbjct: 459 LKICQEATQPKSLYRSASAAANRPKTA-TTTDSVNRTPSQRGRVAVPSTPSVRSASRAM- 516

Query: 488 ENSPRRVVVRRVQATSPKRDAQTDKSDQIQPKPIWKRGLTEFSLLTRLRAFGQSRRQESP 547
             SPR  + R     +P R    +                   +  RL +  +SR     
Sbjct: 517 -TSPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINARLNSASRSRSANMI 575

Query: 548 TRNENGNDRNPLTSPV 563
            +  NG+D N  +SPV
Sbjct: 576 RQGANGSDSNMSSSPV 591


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 194  CLDGSLLERIGSGSGGDFDEEL 215
            CLD SL ER+ S SG +++ E+
Sbjct: 1293 CLDASLHERLESSSGLNYESEI 1314


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,662
Number of Sequences: 5004
Number of extensions: 112707
Number of successful extensions: 248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 11
length of query: 706
length of database: 2,362,478
effective HSP length: 78
effective length of query: 628
effective length of database: 1,972,166
effective search space: 1238520248
effective search space used: 1238520248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)