Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001802-TA|BGIBMGA001802-PA|undefined
(706 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 33 3.5
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 33 3.5
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 33 3.5
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 33 3.5
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 33 3.5
AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein. 33 4.6
AB058715-1|BAB47441.1| 803|Homo sapiens KIAA1812 protein protein. 33 4.6
BC065284-1|AAH65284.1| 1381|Homo sapiens CDH23 protein protein. 32 6.1
BC032581-1|AAH32581.1| 1061|Homo sapiens CDH23 protein protein. 32 6.1
AY010111-1|AAG27034.2| 3354|Homo sapiens cadherin 23 protein. 32 6.1
AL772287-2|CAI13626.1| 3359|Homo sapiens cadherin-like 23 protein. 32 6.1
AL772287-1|CAI13625.2| 1066|Homo sapiens cadherin-like 23 protein. 32 6.1
AL731541-6|CAI40841.1| 3359|Homo sapiens cadherin-like 23 protein. 32 6.1
AL731541-5|CAM20296.1| 1066|Homo sapiens cadherin-like 23 protein. 32 6.1
AL359183-3|CAI13426.1| 3359|Homo sapiens cadherin-like 23 protein. 32 6.1
AL359183-2|CAI13425.2| 1066|Homo sapiens cadherin-like 23 protein. 32 6.1
AF312024-1|AAG48303.1| 3354|Homo sapiens cadherin related 23 pro... 32 6.1
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
SRm300 protein.
Length = 2296
Score = 33.1 bits (72), Expect = 3.5
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 458 SPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQT----DKS 513
SPEP + S R + ++ S+ SP+ ++R ++ S + +T D+S
Sbjct: 1732 SPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRS 1791
Query: 514 DQIQPKPIWKRGLTEFSLLTRLRAFGQSRRQESPTRNEN---------GNDRNPLTSPVK 564
Q ++ S +TR R G SP R E+ G R P TS +
Sbjct: 1792 GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKR 1851
Query: 565 VVRRSRPEAREGVRRRSNSLSNETVNSAEP 594
R+ P + R R++ ++ S P
Sbjct: 1852 SRSRTSPAPWKRSRSRASPATHRRSRSRTP 1881
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 33.1 bits (72), Expect = 3.5
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 458 SPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQT----DKS 513
SPEP + S R + ++ S+ SP+ ++R ++ S + +T D+S
Sbjct: 764 SPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRS 823
Query: 514 DQIQPKPIWKRGLTEFSLLTRLRAFGQSRRQESPTRNEN---------GNDRNPLTSPVK 564
Q ++ S +TR R G SP R E+ G R P TS +
Sbjct: 824 GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKR 883
Query: 565 VVRRSRPEAREGVRRRSNSLSNETVNSAEP 594
R+ P + R R++ ++ S P
Sbjct: 884 SRSRTSPAPWKRSRSRASPATHRRSRSRTP 913
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 33.1 bits (72), Expect = 3.5
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 458 SPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQT----DKS 513
SPEP + S R + ++ S+ SP+ ++R ++ S + +T D+S
Sbjct: 1732 SPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRS 1791
Query: 514 DQIQPKPIWKRGLTEFSLLTRLRAFGQSRRQESPTRNEN---------GNDRNPLTSPVK 564
Q ++ S +TR R G SP R E+ G R P TS +
Sbjct: 1792 GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKR 1851
Query: 565 VVRRSRPEAREGVRRRSNSLSNETVNSAEP 594
R+ P + R R++ ++ S P
Sbjct: 1852 SRSRTSPAPWKRSRSRASPATHRRSRSRTP 1881
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 33.1 bits (72), Expect = 3.5
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 458 SPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQT----DKS 513
SPEP + S R + ++ S+ SP+ ++R ++ S + +T D+S
Sbjct: 255 SPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRS 314
Query: 514 DQIQPKPIWKRGLTEFSLLTRLRAFGQSRRQESPTRNEN---------GNDRNPLTSPVK 564
Q ++ S +TR R G SP R E+ G R P TS +
Sbjct: 315 GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKR 374
Query: 565 VVRRSRPEAREGVRRRSNSLSNETVNSAEP 594
R+ P + R R++ ++ S P
Sbjct: 375 SRSRTSPAPWKRSRSRASPATHRRSRSRTP 404
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 33.1 bits (72), Expect = 3.5
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 458 SPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQT----DKS 513
SPEP + S R + ++ S+ SP+ ++R ++ S + +T D+S
Sbjct: 1780 SPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRS 1839
Query: 514 DQIQPKPIWKRGLTEFSLLTRLRAFGQSRRQESPTRNEN---------GNDRNPLTSPVK 564
Q ++ S +TR R G SP R E+ G R P TS +
Sbjct: 1840 GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKR 1899
Query: 565 VVRRSRPEAREGVRRRSNSLSNETVNSAEP 594
R+ P + R R++ ++ S P
Sbjct: 1900 SRSRTSPAPWKRSRSRASPATHRRSRSRTP 1929
>AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein.
Length = 708
Score = 32.7 bits (71), Expect = 4.6
Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 7/143 (4%)
Query: 456 HVSPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQTDKSDQ 515
H++ EP+ S E ++ + R HS + ++ R + + +S
Sbjct: 163 HLATEPLGTNSWERDKTCRELGATRGHSASHDKDLTPPPSSRGKKKKKKSTRKKRRRSSS 222
Query: 516 IQPKPIWKRGLTEFSLLTRLRAFGQSRRQESPTRNENGNDRNPLTSPVKVVRRSRPEARE 575
P P+ K+ R R+F + RR S + D + ++SR R+
Sbjct: 223 YSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSPKSKRRDEK------RHKKQSRSRPRK 276
Query: 576 GVRRRSNSLSNETVNSAEPRPGT 598
R R + + + S+E RP +
Sbjct: 277 SHRHRHHRCPSRS-QSSESRPSS 298
>AB058715-1|BAB47441.1| 803|Homo sapiens KIAA1812 protein protein.
Length = 803
Score = 32.7 bits (71), Expect = 4.6
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 7 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 66
Query: 309 MTSVSLTAVNQNDAYE-RLCNASTSKVEVLKSLDKNRKSSLPNLVKESDYEFL 360
TSV NDA N S SLDK+ + L L+ DYE +
Sbjct: 67 GTSVLTVLATDNDAGTFGEVNYFFSDDPDRFSLDKD--TGLIMLIARLDYELI 117
>BC065284-1|AAH65284.1| 1381|Homo sapiens CDH23 protein protein.
Length = 1381
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 416 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 475
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 476 GTSVLTVLATDNDA 489
>BC032581-1|AAH32581.1| 1061|Homo sapiens CDH23 protein protein.
Length = 1061
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 416 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 475
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 476 GTSVLTVLATDNDA 489
>AY010111-1|AAG27034.2| 3354|Homo sapiens cadherin 23 protein.
Length = 3354
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 416 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 475
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 476 GTSVLTVLATDNDA 489
>AL772287-2|CAI13626.1| 3359|Homo sapiens cadherin-like 23 protein.
Length = 3359
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 421 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 480
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 481 GTSVLTVLATDNDA 494
>AL772287-1|CAI13625.2| 1066|Homo sapiens cadherin-like 23 protein.
Length = 1066
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 421 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 480
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 481 GTSVLTVLATDNDA 494
>AL731541-6|CAI40841.1| 3359|Homo sapiens cadherin-like 23 protein.
Length = 3359
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 421 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 480
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 481 GTSVLTVLATDNDA 494
>AL731541-5|CAM20296.1| 1066|Homo sapiens cadherin-like 23 protein.
Length = 1066
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 421 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 480
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 481 GTSVLTVLATDNDA 494
>AL359183-3|CAI13426.1| 3359|Homo sapiens cadherin-like 23 protein.
Length = 3359
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 421 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 480
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 481 GTSVLTVLATDNDA 494
>AL359183-2|CAI13425.2| 1066|Homo sapiens cadherin-like 23 protein.
Length = 1066
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 421 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 480
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 481 GTSVLTVLATDNDA 494
>AF312024-1|AAG48303.1| 3354|Homo sapiens cadherin related 23
protein.
Length = 3354
Score = 32.3 bits (70), Expect = 6.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 259 AIPI-VSTEDVFDFDV--NRKTPNFVNIVNTEVNVQNTNDYGTVFND-------YGHVST 308
AIP+ T D +DFD+ N P+ V ++ + N ND +F+ Y +V+
Sbjct: 416 AIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTV 475
Query: 309 MTSVSLTAVNQNDA 322
TSV NDA
Sbjct: 476 GTSVLTVLATDNDA 489
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.313 0.129 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,343,680
Number of Sequences: 224733
Number of extensions: 3773860
Number of successful extensions: 6643
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6618
Number of HSP's gapped (non-prelim): 61
length of query: 706
length of database: 73,234,838
effective HSP length: 95
effective length of query: 611
effective length of database: 51,885,203
effective search space: 31701859033
effective search space used: 31701859033
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 69 (31.9 bits)
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