Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001801-TA|BGIBMGA001801-PA|IPR010339|TIP49, C-terminal
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...   416   e-117
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...   232   6e-62
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    27   4.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   6.3  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   8.4  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    26   8.4  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   8.4  

>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score =  416 bits (1025), Expect = e-117
 Identities = 192/302 (63%), Positives = 243/302 (80%), Gaps = 1/302 (0%)

Query: 101 LTLKTTDMETNYDMGAQMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 160
           LT+++TDMET YD+G +MIDSL KEKV AGDVI+IDK+ G++ KLGRSF+RARDYDA G 
Sbjct: 155 LTIRSTDMETVYDLGTKMIDSLTKEKVLAGDVISIDKSVGRVTKLGRSFSRARDYDAMGA 214

Query: 161 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKV 220
             RFVQCP+GE+QKRKEVVHTV+LH++DVINSRT GFLALFSGDTGEIK E+REQIN+KV
Sbjct: 215 DTRFVQCPQGEIQKRKEVVHTVSLHDIDVINSRTQGFLALFSGDTGEIKPEVREQINTKV 274

Query: 221 AEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXXXXXXY 280
           +EWREEGKAE++PGVLF+DE HMLDIECFSF NRALE + APIVIMA+N          Y
Sbjct: 275 SEWREEGKAEIVPGVLFVDEVHMLDIECFSFFNRALEDDLAPIVIMASNRGITRIRGTNY 334

Query: 281 RSPHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLR 340
           RSPHGIP+DLLDRM+I++T PYS  E+K+IL IRC+EED  M   AL  L+ +  ETSLR
Sbjct: 335 RSPHGIPVDLLDRMLIISTLPYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSLR 394

Query: 341 YAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDEHRSEQFLKEYQDEFMF-NDGSGDA 399
           YA+ LI++++ VA +RK+A +   D+++VY LFLD+ RS ++L+EY   ++  N+ S   
Sbjct: 395 YALLLISSSNQVALKRKSATIEESDIRRVYELFLDQKRSVEYLEEYGKNYITENEWSASG 454

Query: 400 SQ 401
           +Q
Sbjct: 455 AQ 456



 Score = 79.4 bits (187), Expect = 8e-16
 Identities = 34/50 (68%), Positives = 47/50 (94%)

Query: 15 ITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIRE 64
          ++++ERIGAHSHI+G+GL+D+LEP++ SQGMVGQ  AR+AAGVIL+MI+E
Sbjct: 11 VSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQE 60


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score =  232 bits (568), Expect = 6e-62
 Identities = 124/292 (42%), Positives = 182/292 (62%), Gaps = 10/292 (3%)

Query: 101 LTLKTTDMETNYDMGAQMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 160
           L LKT        +   + +SL +E+V  GDVI I+  TG + ++GRS A A ++D   +
Sbjct: 160 LGLKTHKGTKQLKLDPSIYESLQREQVSTGDVIYIEANTGAVKRVGRSDAYATEFDLEAE 219

Query: 161 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFS-------GDTGEIKSEIR 213
           +  +V  P+GE+ KRKE+V  VTLH++D+ N+R  G   + S           EI  ++R
Sbjct: 220 E--YVPMPKGEVHKRKEIVQDVTLHDLDIANARPQGGQDIMSMMGQLMKPKKTEITDKLR 277

Query: 214 EQINSKVAEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXX- 272
            +IN  V ++ E+G AE+IPGVLFIDE HMLDIECF++LN+ALES  +PIVI A+N    
Sbjct: 278 GEINKVVNKYIEQGIAELIPGVLFIDEVHMLDIECFTYLNQALESTISPIVIFASNRGIC 337

Query: 273 XXXXXXXYRSPHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTR 332
                   ++PHGIP DLLDR++IV T PYS+SE++ IL IR + E+  ++ + L  L +
Sbjct: 338 TIRGTEDIQAPHGIPTDLLDRLLIVRTLPYSESEIRSILQIRAKVENIILTDECLDKLAQ 397

Query: 333 VATETSLRYAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDEHRSEQFLK 384
             + TSLRY IQL+T  S++A      E+ ++D+++   LFLD  RS Q +K
Sbjct: 398 EGSRTSLRYVIQLLTPVSIIASLHGNKEIGVQDIEECNDLFLDARRSAQVVK 449



 Score = 52.8 bits (121), Expect = 8e-08
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 8  QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREVK 66
          Q+ EV+   R  RI  HSHI+GLGL +      V  G +GQ+ AR+A G+I  +I+  K
Sbjct: 3  QISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKK 61


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 112 YDMGAQMIDSLLKEKVQAGDVITIDKATGK-INKLGRSFARARD-YDATGQQARFVQCP 168
           Y +   + D  LK+KV A D  T+DKA  + I  L  +   A+D ++A  ++   V  P
Sbjct: 545 YSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANP 603


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 335 TETSLRYAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDEHRSEQFLKEYQDEFMFND 394
           T  SL+     + ++S+V    K+ E S  D   + S   +E  + + + + +D+ +FND
Sbjct: 866 TTQSLQMQSNSVNSSSMV-DASKSKEKSGGDTSALDSNAKNEPTAAKPISKLEDDALFND 924

Query: 395 GSGDA 399
            +G+A
Sbjct: 925 SAGNA 929


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 288 LDLLDRMIIVATSPYSQSELKDILNIR 314
           LDLLD+     TSP S  E K +L ++
Sbjct: 217 LDLLDQSDFSLTSPSSAKEFKQLLTLK 243


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 200 LFSGDTGEIK--SEIREQINSKVAEWREEGKAEMIPGVLFIDEAHML 244
           L S D G +   S+ R +   ++    +E +    P +LF+DE H+L
Sbjct: 240 LLSLDVGSLVAGSKFRGEFEERIKSVLKEVEESETPIILFVDEMHLL 286


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 7   AQVQEVRSITRIERIGAHSHIRGLGLDD 34
           A +++V   T I+ +G HSHIR   + D
Sbjct: 252 ASIRKVHPNTPIQILGGHSHIRDFAVYD 279


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,395
Number of Sequences: 5004
Number of extensions: 48091
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 11
length of query: 408
length of database: 2,362,478
effective HSP length: 74
effective length of query: 334
effective length of database: 1,992,182
effective search space: 665388788
effective search space used: 665388788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)