Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001801-TA|BGIBMGA001801-PA|IPR010339|TIP49, C-terminal
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57353| Best HMM Match : TIP49 (HMM E-Value=0)                      430   e-121
SB_16660| Best HMM Match : TIP49 (HMM E-Value=1.1e-21)                138   1e-32
SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_9354| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)            29   5.2  
SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)                     29   6.8  
SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)                 29   9.0  

>SB_57353| Best HMM Match : TIP49 (HMM E-Value=0)
          Length = 283

 Score =  430 bits (1060), Expect = e-121
 Identities = 198/266 (74%), Positives = 231/266 (86%)

Query: 131 DVITIDKATGKINKLGRSFARARDYDATGQQARFVQCPEGELQKRKEVVHTVTLHEVDVI 190
           D+ITIDKATGKI+KLGRSF RARDYDA G Q +FVQCPEGELQKRKEVVHTVTLHE+DVI
Sbjct: 2   DIITIDKATGKISKLGRSFTRARDYDAMGPQTKFVQCPEGELQKRKEVVHTVTLHEIDVI 61

Query: 191 NSRTHGFLALFSGDTGEIKSEIREQINSKVAEWREEGKAEMIPGVLFIDEAHMLDIECFS 250
           NSRT GFLALF+GDTGEIKSE+REQINSKVAEWREEGKA+++PGVLF+DE HMLDIECFS
Sbjct: 62  NSRTQGFLALFAGDTGEIKSEVREQINSKVAEWREEGKADIVPGVLFVDEVHMLDIECFS 121

Query: 251 FLNRALESETAPIVIMATNXXXXXXXXXXYRSPHGIPLDLLDRMIIVATSPYSQSELKDI 310
           FLNRALES+ AP++IMATN          Y+SPHGIPLDLLDR++I++T PY + +L+ I
Sbjct: 122 FLNRALESDMAPVLIMATNRGITKIRGTNYKSPHGIPLDLLDRLLIISTHPYEEKDLRHI 181

Query: 311 LNIRCEEEDCQMSADALTVLTRVATETSLRYAIQLITTASLVAKRRKAAEVSMEDVKKVY 370
           L IRCEEED +MS DA+ VLT++A ETSLRY+IQLIT ASLV ++RK  EV+M+D+K+VY
Sbjct: 182 LTIRCEEEDVEMSDDAMMVLTKIAQETSLRYSIQLITAASLVCRKRKGTEVAMDDIKRVY 241

Query: 371 SLFLDEHRSEQFLKEYQDEFMFNDGS 396
           SLF DE RS QFLKEYQ EFMFN+ S
Sbjct: 242 SLFFDESRSTQFLKEYQQEFMFNEES 267


>SB_16660| Best HMM Match : TIP49 (HMM E-Value=1.1e-21)
          Length = 150

 Score =  138 bits (333), Expect = 1e-32
 Identities = 68/149 (45%), Positives = 97/149 (65%)

Query: 243 MLDIECFSFLNRALESETAPIVIMATNXXXXXXXXXXYRSPHGIPLDLLDRMIIVATSPY 302
           MLDIECF++L+RALES  +PIVI ATN            +PHGIPLDLLDR++IV T PY
Sbjct: 1   MLDIECFTYLHRALESTISPIVIFATNRGNCTIRGTEISAPHGIPLDLLDRVMIVRTLPY 60

Query: 303 SQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAIQLITTASLVAKRRKAAEVS 362
           SQ E+  I+ IR + E  Q+  ++L +L    T+T+LRYA+QL+T A+L+A+      ++
Sbjct: 61  SQDEMMQIIKIRAQIEGIQVDDESLELLGETGTKTTLRYAVQLLTPANLLARINGRDTIN 120

Query: 363 MEDVKKVYSLFLDEHRSEQFLKEYQDEFM 391
             DV+++  LF D   S + L E  D++M
Sbjct: 121 KGDVEEINELFYDAKSSAKLLAEQADKYM 149


>SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 22  GAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREVK 66
           GAHSHIRGLGLDD+LE RQVSQGMVGQ  AR+AAG+IL+MI+E K
Sbjct: 122 GAHSHIRGLGLDDALEARQVSQGMVGQVTARRAAGIILEMIKEGK 166



 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 23/30 (76%), Positives = 27/30 (90%)

Query: 101 LTLKTTDMETNYDMGAQMIDSLLKEKVQAG 130
           LTLKTT+MET YD+G +MI+SL KEKVQAG
Sbjct: 256 LTLKTTEMETIYDLGTKMIESLTKEKVQAG 285


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 164 FVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKVAEW 223
           F +C +G L K+  ++ T   H++  + +  H  L    G T E       Q + +++  
Sbjct: 649 FERCIQGILSKKTRILVT---HQLQYLQNADHILLMKDGGITREGSYAEISQSSEEISFL 705

Query: 224 REEGKAEMIPGVLFIDEAHMLDI 246
            E G+A ++P  L  D +  +++
Sbjct: 706 EEHGEAPVVPRPLLRDRSLEVEV 728


>SB_9354| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)
          Length = 386

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 175 RKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKVAEWREEGKAEMIPG 234
           +K+V   + L +    NS T   +   S + G+      +Q+ +K+A+W  EG   +I  
Sbjct: 49  KKKVGDDIKLFKTAYFNSSTQTIIN--STEIGKALRNTHQQVLNKIAQWVSEGSGWVIES 106

Query: 235 VLFIDEAHMLDIE 247
           V    + H L+I+
Sbjct: 107 V----DGHYLNID 115


>SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)
          Length = 423

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 310 ILNIRCEEEDCQMSADALTVLTRVATETSLRYAIQLITTASLVAK-RRKAAEVSMEDVKK 368
           +LN+   +        +L   + +  E    +++Q   T     K ++K A+ S+E+ K+
Sbjct: 35  VLNVEENKSKALYKNHSLVSTSSLQAEIRQLHSLQQKRTTQPQQKAKKKTAKFSLENEKE 94

Query: 369 VYSLFLDEHRSEQFLKEYQDEFMFNDGSG 397
            Y  + +  RS +FL    D+   N   G
Sbjct: 95  DYEFYQNVDRSLEFLTNLDDDASTNGKLG 123


>SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)
          Length = 1329

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 290 LLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLRYAIQLITTA 349
           LL  +  V  + YS S  K     + +EE     AD  ++     TET LR  I+L    
Sbjct: 449 LLSSLTRVVLALYSNSSTKSNGIKQMQEEFNFKMADMFSIEGEQKTETKLR--IRLAKLM 506

Query: 350 SLVAKRRKAAEVSMEDVKKVYSLF 373
            L  +R+    V  ++VK +  LF
Sbjct: 507 ELFTERKSRPVVIFDNVKDLKLLF 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,198,450
Number of Sequences: 59808
Number of extensions: 348259
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 10
length of query: 408
length of database: 16,821,457
effective HSP length: 84
effective length of query: 324
effective length of database: 11,797,585
effective search space: 3822417540
effective search space used: 3822417540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)