Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001801-TA|BGIBMGA001801-PA|IPR010339|TIP49, C-terminal
         (408 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb (recombi...   357   1e-98
Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical pr...   188   8e-48
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    29   7.9  

>AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb
           (recombination protein) homologprotein 2 protein.
          Length = 448

 Score =  357 bits (877), Expect = 1e-98
 Identities = 163/291 (56%), Positives = 214/291 (73%)

Query: 101 LTLKTTDMETNYDMGAQMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 160
           LT++TTDMET YD+G++M+D+ LKEKV  GDVI +DKA+G++ +LGRSF R+ DYDA G 
Sbjct: 157 LTMRTTDMETIYDLGSKMVDACLKEKVMPGDVIQVDKASGRVTRLGRSFNRSHDYDAMGP 216

Query: 161 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKV 220
           + + VQCP+GE+QKR+E VHTV LH++DVINSRT G++ALFSGDTGEIK+E+R+QIN KV
Sbjct: 217 KVKLVQCPDGEIQKRRETVHTVCLHDIDVINSRTQGYVALFSGDTGEIKAEVRDQINKKV 276

Query: 221 AEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXXXXXXY 280
            EWREEGKA+ +PGVLFIDEAHMLDIECFSFLNRA+E E +P++IMATN           
Sbjct: 277 LEWREEGKAKFVPGVLFIDEAHMLDIECFSFLNRAIEGELSPLIIMATNRLIEKVRGTDV 336

Query: 281 RSPHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLR 340
            S HGIP D LDRM+I+   PY++ +   IL+IRC+EE  ++   AL +L ++   TSLR
Sbjct: 337 ESAHGIPSDFLDRMLIINAIPYTKEDTAKILSIRCDEEGVKLQPTALDLLVKLQEATSLR 396

Query: 341 YAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDEHRSEQFLKEYQDEFM 391
           Y I LI  + ++  R KA  V+ + +   Y LF D  RSE+ L E    F+
Sbjct: 397 YCIHLIAASEVIRIRSKAEIVTTDHIGSAYRLFFDTKRSEKILTEESAGFL 447



 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 12 VRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREVK 66
          V+ I ++ER   HSHI GLGL+D LE   VS GMVGQ  AR+AAG+I++MI+E K
Sbjct: 9  VKDIVKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGK 63


>Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical
           protein C27H6.2 protein.
          Length = 458

 Score =  188 bits (457), Expect = 8e-48
 Identities = 95/253 (37%), Positives = 151/253 (59%), Gaps = 10/253 (3%)

Query: 101 LTLKTTDMETNYDMGAQMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 160
           L+LKT        +   + DS+LK++V+ GDVI I+  +G + ++GR    A ++D    
Sbjct: 177 LSLKTAKGSKQLKLDPSIYDSILKQRVEVGDVIYIEANSGIVKRVGRCDVYASEFDLEAD 236

Query: 161 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHG--------FLALFSGDTGEIKSEI 212
           +  FV  P+G+++K K++V  V+LH++D+ N+R  G           L +    E+   +
Sbjct: 237 E--FVPMPKGDVRKSKDIVQNVSLHDLDIANARPQGRQGDVSNIVSQLMTPKKTEVTDRL 294

Query: 213 REQINSKVAEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXX 272
           R +IN  V E+ E G AE++PGVLFIDE HMLD+ECF++L RALES  AP+V+ ATN   
Sbjct: 295 RSEINKVVNEYIESGVAELMPGVLFIDEVHMLDVECFTYLYRALESPMAPVVVFATNRGT 354

Query: 273 XXXXXXXYRSPHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTR 332
                   ++PHGIP ++LDR++I+ T  Y++ +++ IL  R E E+ Q    A  +LTR
Sbjct: 355 TTVRGLGDKAPHGIPPEMLDRLMIIPTMKYNEEDIRKILVHRTEAENVQFEEKAFDLLTR 414

Query: 333 VATETSLRYAIQL 345
           +  +T  R  I++
Sbjct: 415 LCAQTCGREVIEV 427



 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 2  ASIAAAQVQEVRSITR-IERIGAHSHIRGLGLD-DSLEPRQVSQGMVGQKMARKAAGVIL 59
          +S   A ++EV+   + I+RI AHSH++GLG+D ++ E    + G VGQ  AR AA +++
Sbjct: 13 SSSRLAPIEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVV 72

Query: 60 QMIR 63
           MIR
Sbjct: 73 DMIR 76


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 154 DYDATGQQARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIR 213
           D  ++   A FV CPE  L KRK++V      ++ +  S           ++   +  + 
Sbjct: 401 DLSSSANNASFVTCPEDVLIKRKKLVAAQQSSDIQLTKSMEDNSK---ENESKNSEKTMM 457

Query: 214 EQINSKVAEWREEGKAEMIP 233
           E+ N ++ + R++GK  + P
Sbjct: 458 EERNKQI-DVRKDGKRRIQP 476


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 154 DYDATGQQARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIR 213
           D  ++   A FV CPE  L KRK++V      ++ +  S           ++   +  + 
Sbjct: 689 DLSSSANNASFVTCPEDVLIKRKKLVAAQQSSDIQLTKSMEDNSK---ENESKNSEKTMM 745

Query: 214 EQINSKVAEWREEGKAEMIP 233
           E+ N ++ + R++GK  + P
Sbjct: 746 EERNKQI-DVRKDGKRRIQP 764


>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 332 RVATETSLRYAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDE 376
           R   ++ +R  I  +T   L+     A E  +  V KVY+LF+DE
Sbjct: 336 RTVADSLIRSDISNVTPFHLIIAVLSAVEAQLLMVHKVYALFVDE 380


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,578,942
Number of Sequences: 27539
Number of extensions: 265036
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 7
length of query: 408
length of database: 12,573,161
effective HSP length: 83
effective length of query: 325
effective length of database: 10,287,424
effective search space: 3343412800
effective search space used: 3343412800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)