Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001801-TA|BGIBMGA001801-PA|IPR010339|TIP49, C-terminal
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0608 - 4399252-4399894,4401640-4402427 433 e-122
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 268 7e-72
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418... 237 2e-62
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 237 2e-62
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 433 bits (1068), Expect = e-122
Identities = 196/305 (64%), Positives = 249/305 (81%)
Query: 101 LTLKTTDMETNYDMGAQMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 160
LTLKTTDMET Y++G +MI++L KEKVQ+GDV+ +DKA+GK+ KLGRS R+RDYDA G
Sbjct: 171 LTLKTTDMETVYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGP 230
Query: 161 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKV 220
+FV+CPEGELQKRKEVVH VTLHE+DVINSRT GFLALF+GDTGEI++E+REQI++KV
Sbjct: 231 HTKFVKCPEGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKV 290
Query: 221 AEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXXXXXXY 280
AEWREEGKAE++PGVLFIDE HMLDIECFSFLNRALE++ API+++ATN Y
Sbjct: 291 AEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNY 350
Query: 281 RSPHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVATETSLR 340
RSPHGIP D LDR++I+ T PY++ +++ IL+IRC+EED +MSADA +LT++ ETSLR
Sbjct: 351 RSPHGIPPDFLDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLR 410
Query: 341 YAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDEHRSEQFLKEYQDEFMFNDGSGDAS 400
YAI LIT+A+L ++RK V MED+ +VY LFLD RS Q+L EYQ ++MFN+ G+A
Sbjct: 411 YAIHLITSAALACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYMFNEVPGEAG 470
Query: 401 QVMME 405
M+
Sbjct: 471 DDAMQ 475
Score = 84.6 bits (200), Expect = 1e-16
Identities = 41/59 (69%), Positives = 49/59 (83%)
Query: 8 QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREVK 66
++ E R +TRIERIGAHSHIRGLGLD SLE R S+GMVGQ AR+AAG+ILQ+IR+ K
Sbjct: 6 RLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLIRQGK 64
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 268 bits (656), Expect = 7e-72
Identities = 144/295 (48%), Positives = 195/295 (66%), Gaps = 32/295 (10%)
Query: 101 LTLKTTDMETNYDMGAQMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 160
LTLKTTDMET ++G +MI++L KEK+Q+GD + + + L A RDYDA
Sbjct: 84 LTLKTTDMETVDELGGKMIEALGKEKLQSGDGCGLREGD-QAWPLNWEVAGCRDYDAVCP 142
Query: 161 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKV 220
Q + V+CPEGELQK T GFLALF+GDTGEI++E REQI++KV
Sbjct: 143 QTKSVKCPEGELQK-------------------TQGFLALFTGDTGEIRAEAREQIDTKV 183
Query: 221 AEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXXXXXXY 280
AEWREEGKAE++P DIECFSFLNRALE++ PI+++ATN Y
Sbjct: 184 AEWREEGKAEIVP-----------DIECFSFLNRALENDVTPILVIATNRGITSIRGINY 232
Query: 281 RSPHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMS-ADALTVLTRVATETSL 339
+S HGIP D L+R++I+ T PY++ ++ +L+IRC+EED +MS A A +LT++ ET+L
Sbjct: 233 QSLHGIPPDFLNRLLIITTQPYTEDDIPKVLDIRCDEEDVEMSTAYAKVLLTKIGVETAL 292
Query: 340 RYAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDEHRSEQFLKEYQDEFMFND 394
RYAI LIT+A+L ++ V MED+ +VY LFLD RS Q+L EYQ ++MFN+
Sbjct: 293 RYAIHLITSAALAWQKHMGKIVEMEDISRVYQLFLDVKRSAQYLMEYQSQYMFNE 347
>07_01_0564 -
4183441-4183530,4183683-4183752,4183972-4184063,
4184141-4184240,4184372-4184478,4184703-4184768,
4184879-4185013,4185653-4185808,4186113-4186262,
4186426-4186557,4187604-4187693
Length = 395
Score = 237 bits (579), Expect = 2e-62
Identities = 124/296 (41%), Positives = 185/296 (62%), Gaps = 9/296 (3%)
Query: 103 LKTTDMETNYDMGAQMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQQA 162
LKT + + D+L+KEKV GDVI I+ +G + ++GR A A +YD ++
Sbjct: 101 LKTVKGTKQLKLDPTIYDALIKEKVSVGDVIYIEANSGAVKRVGRCDAFATEYDLEAEE- 159
Query: 163 RFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFS--GDT-----GEIKSEIREQ 215
+V P+GE+ K+KE+V VTLH++D N++ G + S G EI ++R++
Sbjct: 160 -YVPIPKGEVHKKKEIVQDVTLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITEKLRQE 218
Query: 216 INSKVAEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXX 275
IN V + +EG AE++PGVLFIDE HMLDIECFS+LNRALES +PIVI+ATN
Sbjct: 219 INKVVNRYIDEGIAELVPGVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNV 278
Query: 276 XXXXYRSPHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVAT 335
SPHGIP+DLLDR++I+ T Y +E+ IL IR + E+ + ++L L +
Sbjct: 279 RGTDMTSPHGIPVDLLDRLVIIRTETYGPTEMIQILAIRAQVEEIDIDEESLAFLGEIGQ 338
Query: 336 ETSLRYAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDEHRSEQFLKEYQDEFM 391
+TSLR+AIQL++ AS+VAK ++S D+++V +L+LD S + L+E Q ++
Sbjct: 339 QTSLRHAIQLLSPASVVAKANGREKISKADLEEVSALYLDAKSSARLLQEQQGRYI 394
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 237 bits (579), Expect = 2e-62
Identities = 123/296 (41%), Positives = 186/296 (62%), Gaps = 9/296 (3%)
Query: 103 LKTTDMETNYDMGAQMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQQA 162
LKT + + D+L+KEKV GDVI I+ +G + ++GR + A +YD ++
Sbjct: 161 LKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEAEE- 219
Query: 163 RFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFS--GDT-----GEIKSEIREQ 215
+V P+GE+ K+KE+V VTLH++D N++ G + S G EI ++R++
Sbjct: 220 -YVPIPKGEVHKKKEIVQDVTLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQE 278
Query: 216 INSKVAEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXX 275
IN V + +EG AE++PGVLFIDE HMLDIECFS+LNRALES +PIVI+ATN
Sbjct: 279 INKVVNRYIDEGIAELVPGVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNV 338
Query: 276 XXXXYRSPHGIPLDLLDRMIIVATSPYSQSELKDILNIRCEEEDCQMSADALTVLTRVAT 335
SPHGIP+DLLDR++I+ T Y +E+ IL IR + E+ ++ ++L L +
Sbjct: 339 RGTDMTSPHGIPVDLLDRLVIIRTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQ 398
Query: 336 ETSLRYAIQLITTASLVAKRRKAAEVSMEDVKKVYSLFLDEHRSEQFLKEYQDEFM 391
+TSLR+AIQL++ AS+VAK ++S D+++V L+LD S + L+E Q+ ++
Sbjct: 399 QTSLRHAIQLLSPASVVAKANGREKISKADLEEVSGLYLDAKSSARLLQEQQERYI 454
Score = 58.4 bits (135), Expect = 1e-08
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 8 QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREVK 66
+++EV+S + +RI H+HI+GLGLD + ++ G VGQ AR+AAG+++ MIR+ K
Sbjct: 2 RIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKK 60
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,473
Number of Sequences: 37544
Number of extensions: 309868
Number of successful extensions: 820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 8
length of query: 408
length of database: 14,793,348
effective HSP length: 84
effective length of query: 324
effective length of database: 11,639,652
effective search space: 3771247248
effective search space used: 3771247248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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