GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001800-TA|BGIBMGA001800-PA|IPR013000|Ribosomal protein
L4/L1e, archeabacterial like, IPR002136|Ribosomal protein L4/L1e
         (434 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.4  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    22   9.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   9.7  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    22   9.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 56   CVSKEAGHQTSAESW 70
            C  K+ GH+ S  SW
Sbjct: 1152 CEEKKPGHKPSTSSW 1166


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 286 KMANTDLTRLLKSDEIRK 303
           K  N DL ++LKSD + K
Sbjct: 25  KYDNIDLNQILKSDRLLK 42


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 284 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 341
           Q KM N       +S  +   +  P K VI++ R L P     ++L  N      KRK
Sbjct: 15  QNKMYNVIQHSPQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK 72


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 286 KMANTDLTRLLKSDEIRK 303
           K  N DL ++LKSD + K
Sbjct: 25  KYDNIDLNQILKSDRLLK 42


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,537
Number of Sequences: 317
Number of extensions: 2979
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 434
length of database: 114,650
effective HSP length: 59
effective length of query: 375
effective length of database: 95,947
effective search space: 35980125
effective search space used: 35980125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)