GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001800-TA|BGIBMGA001800-PA|IPR013000|Ribosomal protein
L4/L1e, archeabacterial like, IPR002136|Ribosomal protein L4/L1e
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   400   e-112
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   398   e-112
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    30   0.73 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   2.2  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    28   2.2  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   9.0  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  400 bits (984), Expect = e-112
 Identities = 196/357 (54%), Positives = 245/357 (68%), Gaps = 5/357 (1%)

Query: 3   LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 62
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 63  HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 122
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 123 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 182
                              ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRD 179

Query: 183 ILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXX 242
           ++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE           
Sbjct: 180 VVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQ 239

Query: 243 XAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR 302
            APGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+
Sbjct: 240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQ 299

Query: 303 KVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 357
            +++A    RV RA  +K NPL N   + +LNPYA     KA ++L   K  KA  +
Sbjct: 300 SIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  398 bits (981), Expect = e-112
 Identities = 194/357 (54%), Positives = 245/357 (68%), Gaps = 5/357 (1%)

Query: 3   LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 62
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 63  HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 122
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 123 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 182
                              ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRD 179

Query: 183 ILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXX 242
           ++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE           
Sbjct: 180 VIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQ 239

Query: 243 XAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR 302
            APGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+
Sbjct: 240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQ 299

Query: 303 KVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 357
            +++A    RV RA  +K NPL N   + +LNPYA     KA +++   K  KA  +
Sbjct: 300 SIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 258 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATR 317
           S     +P++G +       +N  LP   ++  DL  ++  D   K  RA ++ V+R  R
Sbjct: 458 SVIAAANPIYGQYDIRKDPHQNIALPDSMLSRFDLLFIVTDDIDDKKDRALSEHVLRMHR 517

Query: 318 KLNP 321
            L P
Sbjct: 518 YLPP 521


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 275 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 334
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P 
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787

Query: 335 AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 383
             +  ++   +      +  L   ++    L+KRN   K +      RK
Sbjct: 788 PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 297 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 354
           +S  +  +    +K+ IR  R+L+P    ++  + N Y+ + +  ++   R R       
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717

Query: 355 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 384
           L ++E  G +    +PA +  + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 262 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 321
           R++ ++    T    + +  + +  +    L  LLK D+I     +  K    A +  N 
Sbjct: 68  RVEWMYAVPNTNGPNRDSSEMEEYLLGRRRLDDLLK-DKIEDQNNSLEKTEFIALQNANS 126

Query: 322 LTNNKAMLKLNPYAAV--LKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRE 379
           L + +A L+L+P  A+   ++K +  L  ++     +D +    +   R+     ++ RE
Sbjct: 127 LQDTQAKLRLDPLLAIKQQEQKQLQTLMEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRE 186

Query: 380 R 380
           R
Sbjct: 187 R 187


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,559
Number of Sequences: 5004
Number of extensions: 58485
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 6
length of query: 434
length of database: 2,362,478
effective HSP length: 75
effective length of query: 359
effective length of database: 1,987,178
effective search space: 713396902
effective search space used: 713396902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)