Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001800-TA|BGIBMGA001800-PA|IPR013000|Ribosomal protein
L4/L1e, archeabacterial like, IPR002136|Ribosomal protein L4/L1e
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 370 e-102
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 368 e-102
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.26
03_05_0366 - 23505755-23506441 31 1.8
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 4.2
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 30 4.2
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 29 5.5
04_01_0588 + 7657510-7657992,7658397-7658843 29 9.6
02_04_0457 + 23093020-23093343,23093798-23093806 29 9.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 370 bits (911), Expect = e-102
Identities = 183/361 (50%), Positives = 239/361 (66%), Gaps = 4/361 (1%)
Query: 7 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 64
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 65 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 124
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 125 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 184
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185
Query: 185 KVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXX 243
K S +R GKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 186 KAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDL 245
Query: 244 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRK 303
APGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++
Sbjct: 246 APGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQS 305
Query: 304 VLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSG 362
V++ NK V R ++ NPL N A+LKLNPY ++ A L E R K K D++++
Sbjct: 306 VVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTK 365
Query: 363 L 363
L
Sbjct: 366 L 366
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 368 bits (905), Expect = e-102
Identities = 186/376 (49%), Positives = 238/376 (63%), Gaps = 3/376 (0%)
Query: 4 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 62
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 63 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 122
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 123 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 182
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 183 ILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXX 241
K S +RAGKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 183 AEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLL 242
Query: 242 XXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEI 301
APGGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE+
Sbjct: 243 DLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEV 302
Query: 302 RKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEK 360
+ V++ NK V + NPL N A+LKLNPY ++ A L E R K D+++
Sbjct: 303 QSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKR 362
Query: 361 SGLKLSKRNPAMKAEK 376
+ L + + A K
Sbjct: 363 TKLSPEESSKIKAAGK 378
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.26
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 67 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 103
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.8
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 29 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 87
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 88 HRSGQGA 94
+ + + A
Sbjct: 168 NDNDEEA 174
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 4.2
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 244 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 290
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 29.9 bits (64), Expect = 4.2
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 319 LNPLTNNKAMLKLNPYAAVLKRKAIL--ELRRRKNLKALADAEKSGL-------KLSKRN 369
L PLT +AM KL LK +A++ E R R L+ A A SG L +R
Sbjct: 111 LRPLTTLRAMYKLAVEVQSLKARALMVSERRLRYKLEPPAAASSSGEYAPRCYDDLDRRL 170
Query: 370 PAMKAEKLRERRRKN 384
PA+ ++ R R +++
Sbjct: 171 PALSVDESRRRPQQD 185
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 29.5 bits (63), Expect = 5.5
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 271 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 326
K P+KQ K PQ +++ D +R + K + + L A + + + K P +
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468
Query: 327 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 382
A LK +++ L L R+K L A+ + + +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 41 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 97
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 98 MCRGGRMFAPTKPWRRW 114
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 62 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 96
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,371,785
Number of Sequences: 37544
Number of extensions: 416455
Number of successful extensions: 1069
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 9
length of query: 434
length of database: 14,793,348
effective HSP length: 84
effective length of query: 350
effective length of database: 11,639,652
effective search space: 4073878200
effective search space used: 4073878200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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