GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001800-TA|BGIBMGA001800-PA|IPR013000|Ribosomal protein
L4/L1e, archeabacterial like, IPR002136|Ribosomal protein L4/L1e
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               305   4e-83
SB_3873| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_51234| Best HMM Match : E-MAP-115 (HMM E-Value=6.7)                 31   1.8  
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)               30   4.2  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                29   7.4  
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)                   29   7.4  
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)                      29   7.4  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   7.4  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   7.4  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  305 bits (749), Expect = 4e-83
 Identities = 143/246 (58%), Positives = 171/246 (69%), Gaps = 2/246 (0%)

Query: 6   ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 65
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 66  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 125
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH          
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119

Query: 126 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 185
                           ARGH IEKI E+PLV++D ++ + KT  AV  L+ + A+ D+ K
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEK 179

Query: 186 VYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAP 245
              S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE             P
Sbjct: 180 CIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCP 239

Query: 246 GGHLGR 251
           GGHLGR
Sbjct: 240 GGHLGR 245



 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 281 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 340
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276

Query: 341 KAILELRRRKNLKALADAEKSG 362
             +L + RR+  K  A A+K G
Sbjct: 277 AEMLTVERRRAAKEAALAKKRG 298


>SB_3873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 282 LPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRK--LNPLTNNKAMLKLNPYAAVLK 339
           L +PK  +T   R ++ D +  ++    +R+    R+  +NP   + +  K+    A  K
Sbjct: 33  LEKPKFKSTIGKRAVQ-DRVMLLVTKFKRRMAAERRESGINPTMTDGSRKKVEQEKA--K 89

Query: 340 RKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRKN 384
            + I + R  +NL+ +   E+S  K S+R+ AM  E L+E+  K+
Sbjct: 90  GEEIRK-RAMENLEDMKKREESASKKSRRSGAMMVEYLKEKNEKD 133


>SB_51234| Best HMM Match : E-MAP-115 (HMM E-Value=6.7)
          Length = 122

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 322 LTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 381
           LT N++ L  N  A  +  K   E  +R  LK   DA+K  +K +K     KAE+ +E+ 
Sbjct: 54  LTGNESDLFKNTNAQSVTDK---EKEKRDKLKQENDAKKQQIKDAKEKQKQKAEERKEKE 110

Query: 382 RK 383
           +K
Sbjct: 111 KK 112


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/49 (28%), Positives = 29/49 (59%)

Query: 272 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 320
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 258 SAFGRLDPLFGSWKTPS-KQKKNFNLPQPKMAN-TDLTRLLKSDEIR 302
           SA G   PL G W  P+ + KK + L    +AN     + LK DE+R
Sbjct: 741 SALGSKPPLIGFWSLPAGRTKKTWGLTDEDLANWLSDKKNLKPDEVR 787


>SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
          Length = 1143

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)

Query: 317 RKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 376
           +KL+    N   L+L P   V KRK   + R+     +   ++      S R  ++K  K
Sbjct: 720 KKLSKHRKNNKDLELQPIKKVKKRKETKKSRKYSTTDSDCSSDDGENSDSSRERSIKKHK 779

Query: 377 LRERRRKNI 385
            +++R+K I
Sbjct: 780 KKKKRKKKI 788


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 317 RKLNPLTNNK-----AMLKLNPYAAVLKRKA-ILELRRRKNLKALADAEKSGLKLSKRNP 370
           RK  P   NK     A   +  Y A  +R A  +E+RR++  K L   EK   +L  R  
Sbjct: 87  RKSAPFATNKDVRHQAYQHIRDYEADKRRLADSIEIRRQEQAKTLE--EKKRQRLRSREA 144

Query: 371 AMKAEKLRERRR 382
           AM+ ++ +ER R
Sbjct: 145 AMEEKRQKERLR 156


>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
          Length = 493

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 271 KTPSKQKKNFNLPQ--PKMANTDLTRLLKSDEIRKVLRAPNKRVIRA-----TRKLNPLT 323
           +TP +  +  + PQ   K+     ++  K  E+++ L  P +  I A       K    T
Sbjct: 258 ETPRRSSRRLSAPQNEEKVETPKSSKKEKLSELKRRLATPMREAIEAGIALKQTKKKLAT 317

Query: 324 NNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 383
             + ++K  P     K+K    LR+    K      K  L    R       KL+E ++K
Sbjct: 318 PLREVIKSKPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAEIESKPKLKETKKK 377


>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 491

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 310 KRVIRATRKLNPLTNNKAMLKLNPYAAVLK--RKAILELRRRKNLKALADAEKSGLKLSK 367
           K V R TR+ NPL   K + K  P+ +  K  +K        K    +   EK    L +
Sbjct: 369 KPVERQTRRFNPLVIPKKLQKDLPFKSKPKDAKKRQRPSLESKRAVVMEPQEKKVYSLMQ 428

Query: 368 RNPAMKAEKLRERRRK 383
           +      EKLR+R+ K
Sbjct: 429 QLYTANKEKLRKRKEK 444


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 65   TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 103
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 38   DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 79
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 297 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 331
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,284
Number of Sequences: 59808
Number of extensions: 457719
Number of successful extensions: 1332
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 16
length of query: 434
length of database: 16,821,457
effective HSP length: 84
effective length of query: 350
effective length of database: 11,797,585
effective search space: 4129154750
effective search space used: 4129154750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)