GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001800-TA|BGIBMGA001800-PA|IPR013000|Ribosomal protein
L4/L1e, archeabacterial like, IPR002136|Ribosomal protein L4/L1e
         (434 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    28   0.43 
AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein ...    27   0.75 

>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 268 GSWKTPSKQKKNFNLPQP------KMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 321
           G  K P K+KK  +LP+P      K  N DL ++LK       L+    +V +  R  N 
Sbjct: 153 GQSKQPKKKKKKRSLPKPEAVVIEKCENIDLAKVLKGLTHDDALKDVGDQVAKVRRTQN- 211

Query: 322 LTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 381
             +   +LK    A  ++      L+ + N++ LA +    ++++  +    AE++ E  
Sbjct: 212 -GDMLLVLKRGKEAVRVEAGIKNALKDKANVRTLAPSVM--IEITHLDEITLAEEIAEAL 268

Query: 382 RKNI 385
           ++ +
Sbjct: 269 KQQL 272


>AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein
           protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 60  EAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 102
           + G Q    S+G+G+    +P + G G  +SG  +FGN  +GG
Sbjct: 121 QGGGQGGIPSFGSGQQNGGVPFL-GNGQGQSGFPSFGNGQQGG 162


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,627
Number of Sequences: 2123
Number of extensions: 12856
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 434
length of database: 516,269
effective HSP length: 66
effective length of query: 368
effective length of database: 376,151
effective search space: 138423568
effective search space used: 138423568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)