GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001800-TA|BGIBMGA001800-PA|IPR013000|Ribosomal protein
L4/L1e, archeabacterial like, IPR002136|Ribosomal protein L4/L1e
         (434 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.41 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    26   0.54 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.8  
AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic hor...    23   6.6  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 282 LPQPKMANTDLTRLLKSDEIRKVLRAPNKRV 312
           LP P   N  L  L+ S E+R+  +APN  V
Sbjct: 490 LPPPYRLNKPLMSLITSSEVRQPGKAPNYSV 520


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 0.54
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 286 KMANTDLTRLLKSDEIR-KVLRAPNKRVIRATRKLNPLTN 324
           K+AN DL      +E+  ++L AP  ++IR TR  NP TN
Sbjct: 382 KIANGDLN----FNEVNFRILNAPVNQLIRYTRCENPKTN 417


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 248 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLP 283
           H   +  WT ++     P  G +KT SK    F+LP
Sbjct: 25  HRPAWWFWTATSHEASAPAEGKFKTVSKVPGPFSLP 60


>AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic
           hormone-I protein.
          Length = 52

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 337 VLKRKAILELRRRKNLKALADAE 359
           VL+++ +LEL RRK L+  A  +
Sbjct: 19  VLRQRVLLELARRKALQDQAQID 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,302
Number of Sequences: 429
Number of extensions: 3785
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 434
length of database: 140,377
effective HSP length: 60
effective length of query: 374
effective length of database: 114,637
effective search space: 42874238
effective search space used: 42874238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)