GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001800-TA|BGIBMGA001800-PA|IPR013000|Ribosomal protein
L4/L1e, archeabacterial like, IPR002136|Ribosomal protein L4/L1e
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   375   e-104
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   367   e-102
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    35   0.092
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-...    31   1.5  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   4.6  
At3g01890.1 68416.m00135 SWIB complex BAF60b domain-containing p...    29   6.0  
At1g12270.1 68414.m01419 stress-inducible protein, putative simi...    29   6.0  
At1g33960.1 68414.m04209 avirulence-responsive protein / avirule...    29   8.0  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  375 bits (922), Expect = e-104
 Identities = 187/377 (49%), Positives = 239/377 (63%), Gaps = 3/377 (0%)

Query: 1   MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 58
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 59  KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 118
           K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH   
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 119 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLK 178
                                  ARGH IE +PE+PLVV+D  + + KT  A+  L+++ 
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 179 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVEXXXXXX 237
           A+ D  K   S  +R GKGKMRNRR I RKGPL+++  +   + +AFRN+PGVE      
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 238 XXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 297
                 APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK + LP+ KM N DL R++ 
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 300

Query: 298 SDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 357
           SDEI+ V+    K   RA  K NPL N   MLKLNPYA   KR ++L   +R   K    
Sbjct: 301 SDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKL 360

Query: 358 AEKSGLKLSKRNPAMKA 374
           A+K      +   A+KA
Sbjct: 361 AKKRKTVTKEEALAIKA 377


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  367 bits (904), Expect = e-102
 Identities = 184/374 (49%), Positives = 232/374 (62%), Gaps = 3/374 (0%)

Query: 4   SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 61
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 62  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 121
           GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH      
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124

Query: 122 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWS 181
                               ARGH IE +PE+PLVV+D  + + KT  A+  L+++ A+ 
Sbjct: 125 MKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYD 184

Query: 182 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXX 240
           D  K   S  +R GKGKMRNRR I RKGPL++F  +   + +AFRN+PGVE         
Sbjct: 185 DAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNL 244

Query: 241 XXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDE 300
              APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDE
Sbjct: 245 LKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDE 304

Query: 301 IRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEK 360
           ++ V+        RA  K NPL N   M KLNPYA   KR ++L    R   K     +K
Sbjct: 305 VQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKK 364

Query: 361 SGLKLSKRNPAMKA 374
             +   +   A+KA
Sbjct: 365 RKVVTKEEAQAIKA 378


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 35.1 bits (77), Expect = 0.092
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 290 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYA-AVLKRKAILELRR 348
           TDL    KS+ I  V     ++ +   RK NP+T ++   K +P A  +L+R    + + 
Sbjct: 232 TDLLGTPKSETISGVRNDKARKYLTEMRKKNPVTFSQKFSKADPLALRLLQRLLAFDPKD 291

Query: 349 RKN-LKALADAEKSGLKLSKRNPA----MKAEKLRERRR 382
           R    +ALAD    GL   +R P+     K E   ERRR
Sbjct: 292 RPTPAEALADPYFKGLSKIEREPSSQQISKMEFEFERRR 330


>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
           domain-containing protein weak similarity to SP|P45974
           Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
           {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
           domain
          Length = 413

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 275 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 334
           K   N N+   K A T     LK+ E+R+  RA  K+      K       K  +++   
Sbjct: 162 KVPSNSNVGPAKPALTPEEVKLKAQELRE--RARKKK--EEEEKRMEREREKERIRIGK- 216

Query: 335 AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLR-ERRRK 383
             +L+ K + E+  RK L  L  AEK   K ++     K E+ + ERRRK
Sbjct: 217 -ELLEAKRMEEVNERKRLMFLRKAEKEEEKRAREKIRQKLEEDKAERRRK 265


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 9   LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 57
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At3g01890.1 68416.m00135 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 458

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 285 PKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 344
           P    T+L+ LL + E  K + A ++ +  A RK++     +A       + V    A++
Sbjct: 352 PAPVQTELSNLLANPEKNKEIEACDEAICGAIRKIHEHRRRRAFFLGFSQSPVEFTNALM 411

Query: 345 ELRRRKNLKALA-----DAEKSGLKLSKRNPAMKAEKLRERRRK 383
           E  + K+LK +A     +AEK G       P ++   +R   RK
Sbjct: 412 E-SQTKDLKLVAGEASRNAEKEGRSEFFNQPWVEDAAIRYLNRK 454


>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 572

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 297 KSDEIRKVLRAPNKRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKAL 355
           K+ E  + LR+  K V RA TRK   LT      K    A    +KA+ E R    LK L
Sbjct: 303 KAVERGRELRSDYKMVARALTRKGTALTKMAKCSKDYEPAIEAFQKALTEHRNPDTLKRL 362

Query: 356 ADAEKS 361
            DAE++
Sbjct: 363 NDAERA 368


>At1g33960.1 68414.m04209 avirulence-responsive protein / avirulence
           induced gene (AIG1) identical to AIG1 (exhibits RPS2-
           and avrRpt2-dependent induction early after infection
           with Pseudomonas) SP:U40856 [Arabidopsis thaliana]
           (Plant Cell 8 (2), 241-249 (1996))
          Length = 353

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 14/87 (16%)

Query: 298 SDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 357
           +DE+  +++  N+R  +   +L    +++  L     AA++K    L++   +NLKA+A+
Sbjct: 240 TDEMYHMIKEENERHKKEQEELESKGHSEEQL-----AALMKE---LQIMNERNLKAMAE 291

Query: 358 AEKSGLKLSKRNPAMKA-EKLRERRRK 383
             +  +K+     AM+A EKL E+R K
Sbjct: 292 MMEKNMKI-----AMEAQEKLFEQREK 313


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,214,275
Number of Sequences: 28952
Number of extensions: 320725
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 8
length of query: 434
length of database: 12,070,560
effective HSP length: 83
effective length of query: 351
effective length of database: 9,667,544
effective search space: 3393307944
effective search space used: 3393307944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)