Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001799-TA|BGIBMGA001799-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal
(620 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 602 e-172
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 583 e-166
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 277 2e-74
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 274 8e-74
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 273 3e-73
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 272 3e-73
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 266 2e-71
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 258 8e-69
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 258 8e-69
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 253 2e-67
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 251 1e-66
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 251 1e-66
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 251 1e-66
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 249 4e-66
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 246 3e-65
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 240 2e-63
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 230 2e-60
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 229 3e-60
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 217 2e-56
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 204 1e-52
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 200 2e-51
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 198 7e-51
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 197 2e-50
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 194 1e-49
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 193 3e-49
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 190 2e-48
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 189 5e-48
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 187 2e-47
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 182 6e-46
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 181 1e-45
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 181 1e-45
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 180 2e-45
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 180 2e-45
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 179 4e-45
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 174 1e-43
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 173 4e-43
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 172 7e-43
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 172 7e-43
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 168 1e-41
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 162 5e-40
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 162 7e-40
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 159 4e-39
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 156 4e-38
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 156 4e-38
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 156 5e-38
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 151 1e-36
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 151 1e-36
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 148 1e-35
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 143 3e-34
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 142 5e-34
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 142 5e-34
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 138 8e-33
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 134 2e-31
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 131 1e-30
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 128 1e-29
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 124 1e-28
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 120 4e-27
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 112 8e-25
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 106 5e-23
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 100 3e-21
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 97 2e-20
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 85 2e-16
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 65 2e-10
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 62 1e-09
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 56 9e-08
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 49 1e-05
At2g28600.1 68415.m03476 expressed protein 44 2e-04
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 43 7e-04
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 43 7e-04
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 43 7e-04
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 43 7e-04
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 43 7e-04
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 42 0.001
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 42 0.002
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 40 0.006
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 38 0.020
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 38 0.026
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 38 0.026
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 36 0.080
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 34 0.24
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 34 0.24
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 34 0.24
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 34 0.24
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 34 0.24
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 33 0.43
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 32 0.98
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 32 1.3
At3g14180.1 68416.m01792 expressed protein similar to 6b-interac... 31 1.7
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 31 1.7
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 31 2.3
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 31 3.0
At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondri... 30 4.0
At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SD... 30 5.2
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 29 6.9
At2g15550.1 68415.m01781 hypothetical protein similar to zinc fi... 29 6.9
At3g59870.1 68416.m06681 expressed protein hypothetical protein ... 29 9.2
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si... 29 9.2
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 29 9.2
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 29 9.2
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 602 bits (1487), Expect = e-172
Identities = 292/509 (57%), Positives = 370/509 (72%), Gaps = 7/509 (1%)
Query: 113 EEEHILESVAQSKALMGVAELAKGIQYEEPIKTSWRPPRCILELPETRHEMIRNKLRILV 172
+E+ ++E ++ K LM V ELAKGI Y EP+ T W+PP I ++ + ++IR + I+V
Sbjct: 77 QEKEMMEHLSDKKTLMSVRELAKGITYTEPLLTGWKPPLHIRKMSSKQRDLIRKQWHIIV 136
Query: 173 EGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGK 232
GDD PPPI+ F+ MKFP+ +L L+ KGI +PTPIQVQG+P +L GRDMIGIAFTGSGK
Sbjct: 137 NGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGK 196
Query: 233 TLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPE 292
TLVF LP+IM L++E+ MP EGP GLI+CPSRELA+QT+++++ F+ L G P
Sbjct: 197 TLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPP 256
Query: 293 IRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMID 352
+RS L IGG+ + +EVV++GVHI+VATPGRL DML KK + L+ CRYL +DEADR++D
Sbjct: 257 LRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVD 316
Query: 353 MGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQD 412
+GFE+D+R +F +F QRQTLLFSATMP KIQ FARSALV+PVTVNVGRAGAA+L V Q+
Sbjct: 317 LGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQE 376
Query: 413 LEPAQPEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEER 472
+E + EA+ V LL CLQKT PP LIF E K DVD +HEYLLLKGVEAVAIHGGKDQE+R
Sbjct: 377 VEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDR 436
Query: 473 SRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXX-XXXXX 531
A+ +F+ G+KDVLVATDVASKGLDF +IQHVINYDMP +IENYVHRI
Sbjct: 437 EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 496
Query: 532 XXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLL---DMLGEPDVPAPAG--QGCSYCAGL 586
+ L DL HLL+EA QR+P L D + E + A A +GC+YC GL
Sbjct: 497 ATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVKGCAYCGGL 556
Query: 587 GHRITECPKLEAVQNKQASNIGRRDYLAN 615
GHRI +CPKLE ++ SN R+DY +
Sbjct: 557 GHRIRDCPKLEHQKSVAISN-SRKDYFGS 584
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 583 bits (1439), Expect = e-166
Identities = 286/505 (56%), Positives = 360/505 (71%), Gaps = 7/505 (1%)
Query: 117 ILESVAQSKALMGVAELAKGIQYEEPIKTSWRPPRCILELPETRHEMIRNKLRILVEGDD 176
++E ++ K LM V ELA+GI Y EP+ T W+PP + ++ + ++IR + I V G+D
Sbjct: 32 MMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGED 91
Query: 177 PPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVF 236
PPPI+ F MKFP +LR L+ KGI PTPIQVQG+P VL+GRDMIGIAFTGSGKTLVF
Sbjct: 92 IPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 151
Query: 237 TLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSC 296
LP+I+ L++E+ MP EGP L+ICPSRELAKQT+D+++ F+ L G P +RS
Sbjct: 152 VLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSL 211
Query: 297 LAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFE 356
L IGGV + ++VV+KGVHI+VATPGRL D+L KK + L+ CR L +DEADR++D+GFE
Sbjct: 212 LCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFE 271
Query: 357 EDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPA 416
+D+R +F +F QRQTLLFSATMP KIQ FA SALV+PVTVNVGRAGAA+L V Q++E
Sbjct: 272 DDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYV 331
Query: 417 QPEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAV 476
+ EA+ V LL CLQKT PP LIF E K DVD +HEYLLLKGVEAVAIHGGKDQE+R A+
Sbjct: 332 KQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAI 391
Query: 477 EAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXX 536
F+ G+KDVLVATDVASKGLDF +IQHVINYDMP +IENYVHRI
Sbjct: 392 SLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTF 451
Query: 537 XXXPDHSV-LRDLVHLLREAGQRVPGFLLDMLG---EPDVPAPAG--QGCSYCAGLGHRI 590
+ L DL HLL+EA QR+P L ++ G E + A A +GC+YC GLGHRI
Sbjct: 452 INKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRI 511
Query: 591 TECPKLEAVQNKQASNIGRRDYLAN 615
+CPK E Q A + R+D+ +
Sbjct: 512 LQCPKFEH-QKSVAISSSRKDHFGS 535
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 277 bits (679), Expect = 2e-74
Identities = 156/430 (36%), Positives = 235/430 (54%), Gaps = 13/430 (3%)
Query: 153 ILELPETRHEMIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQG 212
+ + +T E R I VEG D P P+++F+ + FP +L ++ G +PTPIQ QG
Sbjct: 70 VAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQG 129
Query: 213 MPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAK 272
P + GRD+IGIA TGSGKTL + LP I+ Q + +GP L++ P+RELA
Sbjct: 130 WPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM---LAHGDGPIVLVLAPTRELAV 186
Query: 273 QTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKK 332
Q IQ K S +I++ GGV + +QKGV I++ATPGRL+DM++
Sbjct: 187 Q----IQQ--EASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESN 240
Query: 333 MVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALV 392
L YL +DEADRM+DMGF+ +R I S+ RQTL +SAT PK+++ ++ L
Sbjct: 241 NTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY 300
Query: 393 RPVTVNVGRAG-AASLTVRQDLEPAQPEARTVQLLHCLQKTPPPT--LIFAERKQDVDAV 449
P V +G + A+ +RQ ++ + +L+ L+ + L+F + K+ D +
Sbjct: 301 NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQI 360
Query: 450 HEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYD 509
L + G A++IHG K Q ER + FR G+ ++ ATDVA++GLD ++++VINYD
Sbjct: 361 TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD 420
Query: 510 MPEDIENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDMLGE 569
P +E+YVHRI + ++L ++L+EAGQ+V L M G
Sbjct: 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASM-GR 479
Query: 570 PDVPAPAGQG 579
P P G G
Sbjct: 480 STAPPPPGLG 489
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 274 bits (673), Expect = 8e-74
Identities = 153/408 (37%), Positives = 231/408 (56%), Gaps = 20/408 (4%)
Query: 170 ILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTG 229
I GD+ PPP+ TF + + + + KPTP+Q +P +L GRD++ A TG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 230 SGKTLVFTLPIIMFCL-EQEVKMPF-IRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKL 287
SGKT F PII + +Q V+ P R P +I+ P+RELA Q HD + F
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ--- 263
Query: 288 TGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEA 347
TG ++ +A GG +++ + +++GV I+VATPGRL D+L++ V + + R+L +DEA
Sbjct: 264 TG---VKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEA 320
Query: 348 DRMIDMGFEEDVRTIFSYF----AGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAG 403
DRM+DMGFE +R I G RQTLLFSAT P++IQ A L + + VGR G
Sbjct: 321 DRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG 380
Query: 404 AASLTVRQDLE---PAQPEARTVQLLHC-----LQKTPPPTLIFAERKQDVDAVHEYLLL 455
+++ + Q +E + + + LLH +Q TL+F E K+ D++ +L +
Sbjct: 381 SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCI 440
Query: 456 KGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIE 515
G A +IHG + Q+ER A++AF+ G +LVATDVA++GLD ++ HV+N+D+P DI+
Sbjct: 441 NGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 500
Query: 516 NYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFL 563
+YVHRI + S+ R L L++EA Q VP +L
Sbjct: 501 DYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWL 548
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 273 bits (669), Expect = 3e-73
Identities = 159/401 (39%), Positives = 220/401 (54%), Gaps = 12/401 (2%)
Query: 163 MIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDM 222
M R + I VEG D P P++ FQ FP IL + G +PTPIQ QG P L GRD+
Sbjct: 146 MYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDL 205
Query: 223 IGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFI 282
IGIA TGSGKTL + LP ++ Q +++GP LI+ P+RELA Q IQ
Sbjct: 206 IGIAETGSGKTLAYLLPALVHVSAQP---RLGQDDGPIVLILAPTRELAVQ----IQEES 258
Query: 283 RHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYL 342
R L +RS GG + +++GV I++ATPGRL+DML+ + L YL
Sbjct: 259 RKFGLRSG--VRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYL 316
Query: 343 CMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRA 402
+DEADRM+DMGFE +R I S RQTLL+SAT P++++ AR L P +G
Sbjct: 317 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGST 376
Query: 403 G-AASLTVRQDLEPAQPEARTVQLLHCLQKTPPPT--LIFAERKQDVDAVHEYLLLKGVE 459
A+ ++ Q +E + +LL L++ + LIF E K+ D V L + G
Sbjct: 377 DLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWP 436
Query: 460 AVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVH 519
A+AIHG K Q ER R + F+ G ++ ATDVA++GLD +I+ V+NYD P +E+Y+H
Sbjct: 437 ALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIH 496
Query: 520 RIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVP 560
RI + R+LV +L+EAGQ VP
Sbjct: 497 RIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVP 537
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 272 bits (668), Expect = 3e-73
Identities = 163/436 (37%), Positives = 233/436 (53%), Gaps = 17/436 (3%)
Query: 137 IQYEEPIKTSWRPPRCILELPETRHEMIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRG 196
I YE K + I + E R +L I V G D P++TF+ F I+
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 197 LEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRN 256
++ + +KPT IQ Q +P VL+GRD+IGIA TGSGKT F LP+I+ ++Q R+
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ---RD 299
Query: 257 EGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVH 316
EGP G+I P+RELA Q F+ K + + +R GG++ E + ++ G
Sbjct: 300 EGPIGVICAPTRELAHQI------FLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCE 353
Query: 317 IMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFS 376
I+VATPGRL+DML K + + YL +DEADRM D+GFE VR+I RQTLLFS
Sbjct: 354 IVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFS 413
Query: 377 ATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTVQLLHCLQKTP--- 433
ATMP K++ AR L P+ V VG G A+ + Q + +A + L L+K P
Sbjct: 414 ATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWL--LEKLPGMI 471
Query: 434 --PPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATD 491
L+FA +K VD + L L + A+HG KDQ R ++ F+ G VL+ATD
Sbjct: 472 DEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATD 531
Query: 492 VASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXP-DHSVLRDLVH 550
VA++GLD +++ V+NYD+ +D++ +VHRI + +LV+
Sbjct: 532 VAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVN 591
Query: 551 LLREAGQRVPGFLLDM 566
L AGQ VP L D+
Sbjct: 592 SLVAAGQNVPPELTDL 607
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 266 bits (653), Expect = 2e-71
Identities = 148/408 (36%), Positives = 230/408 (56%), Gaps = 20/408 (4%)
Query: 170 ILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTG 229
I GD+ PPP+ TF + + + ++ KPTP+Q +P + GRD++ A TG
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 230 SGKTLVFTLPIIMFCL-EQEVKMPF-IRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKL 287
SGKT F PII + +Q ++ P +R P +I+ P+RELA Q HD + F
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ--- 250
Query: 288 TGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEA 347
TG ++ +A GG V++ + +++GV I+VATPGRL D+L++ V L + R+L +DEA
Sbjct: 251 TG---VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEA 307
Query: 348 DRMIDMGFEEDVRTIFSYF----AGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAG 403
DRM+DMGFE +R I G RQT+LFSAT P++IQ A L + + VGR G
Sbjct: 308 DRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG 367
Query: 404 AASLTVRQDLE---PAQPEARTVQLLHCLQKTPPP-----TLIFAERKQDVDAVHEYLLL 455
+++ + Q +E + + + LLH ++ TL+F E K+ D++ +L +
Sbjct: 368 SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCI 427
Query: 456 KGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIE 515
G A IHG + Q+ER A+ +F+ G +LVATDVA++GLD ++ HV+N+D+P DI+
Sbjct: 428 NGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 487
Query: 516 NYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFL 563
+YVHRI + ++ + L L++EA Q VP +L
Sbjct: 488 DYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWL 535
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 258 bits (632), Expect = 8e-69
Identities = 145/402 (36%), Positives = 222/402 (55%), Gaps = 18/402 (4%)
Query: 174 GDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKT 233
G D PPP+ TF + + + +PTP+Q +P +L RD++ A TGSGKT
Sbjct: 143 GGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKT 202
Query: 234 LVFTLPIIMFCL-EQEVKMPF-IRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSP 291
F PII + +Q V+ P R P+ +I+ P+RELA Q HD + F TG
Sbjct: 203 AAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ---TG-- 257
Query: 292 EIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMI 351
++ +A GG + + + +++G I+VATPGRL D+L++ V + + R+L +DEADRM+
Sbjct: 258 -VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRML 316
Query: 352 DMGFEEDVRTIFSYF----AGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASL 407
DMGFE +R I G RQT+LFSAT P +IQ A + + + VGR G+++
Sbjct: 317 DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTD 376
Query: 408 TVRQDLEPAQPE---ARTVQLLHCLQKTPPP---TLIFAERKQDVDAVHEYLLLKGVEAV 461
+ Q +E Q + + LLH ++T TL+F E K+ D + +L + A
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT 436
Query: 462 AIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
+IHG + Q+ER A+ +F+ G +LVATDVA++GLD ++ HV+N+D+P DI++YVHRI
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 522 XXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFL 563
+ + R L L++EA Q VP +L
Sbjct: 497 GRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWL 538
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 258 bits (632), Expect = 8e-69
Identities = 145/402 (36%), Positives = 222/402 (55%), Gaps = 18/402 (4%)
Query: 174 GDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKT 233
G D PPP+ TF + + + +PTP+Q +P +L RD++ A TGSGKT
Sbjct: 143 GGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKT 202
Query: 234 LVFTLPIIMFCL-EQEVKMPF-IRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSP 291
F PII + +Q V+ P R P+ +I+ P+RELA Q HD + F TG
Sbjct: 203 AAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ---TG-- 257
Query: 292 EIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMI 351
++ +A GG + + + +++G I+VATPGRL D+L++ V + + R+L +DEADRM+
Sbjct: 258 -VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRML 316
Query: 352 DMGFEEDVRTIFSYF----AGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASL 407
DMGFE +R I G RQT+LFSAT P +IQ A + + + VGR G+++
Sbjct: 317 DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTD 376
Query: 408 TVRQDLEPAQPE---ARTVQLLHCLQKTPPP---TLIFAERKQDVDAVHEYLLLKGVEAV 461
+ Q +E Q + + LLH ++T TL+F E K+ D + +L + A
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT 436
Query: 462 AIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
+IHG + Q+ER A+ +F+ G +LVATDVA++GLD ++ HV+N+D+P DI++YVHRI
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 522 XXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFL 563
+ + R L L++EA Q VP +L
Sbjct: 497 GRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWL 538
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 253 bits (620), Expect = 2e-67
Identities = 147/454 (32%), Positives = 237/454 (52%), Gaps = 16/454 (3%)
Query: 113 EEEHILESVAQSKA-LMGVAELAKGIQYEEPIKTSWRPPRCILELPETRHEMIRNKLRIL 171
++E ++ V ++KA + + + +K I+YE K + + I + + R +L +
Sbjct: 460 DDEEFMKRVKKTKAEKLSLVDHSK-IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELK 518
Query: 172 VEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSG 231
V G D P PI+ + IL ++ +KP PIQ Q +P +++GRD IG+A TGSG
Sbjct: 519 VHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSG 578
Query: 232 KTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSP 291
KTL F LP++ +Q P +GP GL++ P+REL +Q H I+ F + L
Sbjct: 579 KTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLG----- 630
Query: 292 EIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDML---DKKMVRLNVCRYLCMDEAD 348
IR GG V++ + +++G I+V TPGR++D+L K+ L +L MDEAD
Sbjct: 631 -IRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEAD 689
Query: 349 RMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLT 408
RM DMGFE + I +RQT+LFSAT P++++ AR L +PV + VG +
Sbjct: 690 RMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD 749
Query: 409 VRQDLEPAQPEARTVQLLHCLQKTPPP--TLIFAERKQDVDAVHEYLLLKGVEAVAIHGG 466
+ Q +E R ++LL L + L+F + ++ DA++ ++ +++HGG
Sbjct: 750 ITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGG 809
Query: 467 KDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXX 526
KDQ +R + F+ ++L+AT VA++GLD ++ V+N+D P E+YVHR+
Sbjct: 810 KDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGR 869
Query: 527 XXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVP 560
D DLV L + Q VP
Sbjct: 870 AGRKGCAVTFISEDDAKYAPDLVKALELSEQPVP 903
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 251 bits (614), Expect = 1e-66
Identities = 149/413 (36%), Positives = 214/413 (51%), Gaps = 15/413 (3%)
Query: 158 ETRHEMIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVL 217
E E + I V G PPP+ +F+ FP +LR + + G PTPIQ Q P +
Sbjct: 134 ELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAM 193
Query: 218 NGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDI 277
GRD++ IA TGSGKTL + +P + Q ++ GP L++ P+RELA Q +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRND--SRMGPTILVLSPTRELATQIQEE 249
Query: 278 IQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLN 337
F R +++ + CL GG + +++G I+VATPGRL D+L+ + + L
Sbjct: 250 AVKFGRSSRISCT-----CL-YGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLR 303
Query: 338 VCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTV 397
YL +DEADRM+DMGFE +R I +RQTL+++AT PK ++ A LV P V
Sbjct: 304 QISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Query: 398 NVGRAG--AASLTVRQDLEPAQPEARTVQLLHCLQKTPP--PTLIFAERKQDVDAVHEYL 453
N+G A+ ++ Q +E P + +L L+ P +IF K+ D +
Sbjct: 364 NIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRN- 422
Query: 454 LLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPED 513
L + A AIHG K Q ER + FR G VLVATDVA++GLD +I+ V+NYD P
Sbjct: 423 LTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNG 482
Query: 514 IENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDM 566
+E+YVHRI D DL+ +L A QRVP + +M
Sbjct: 483 VEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 251 bits (614), Expect = 1e-66
Identities = 149/413 (36%), Positives = 214/413 (51%), Gaps = 15/413 (3%)
Query: 158 ETRHEMIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVL 217
E E + I V G PPP+ +F+ FP +LR + + G PTPIQ Q P +
Sbjct: 134 ELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAM 193
Query: 218 NGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDI 277
GRD++ IA TGSGKTL + +P + Q ++ GP L++ P+RELA Q +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRND--SRMGPTILVLSPTRELATQIQEE 249
Query: 278 IQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLN 337
F R +++ + CL GG + +++G I+VATPGRL D+L+ + + L
Sbjct: 250 AVKFGRSSRISCT-----CL-YGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLR 303
Query: 338 VCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTV 397
YL +DEADRM+DMGFE +R I +RQTL+++AT PK ++ A LV P V
Sbjct: 304 QISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Query: 398 NVGRAG--AASLTVRQDLEPAQPEARTVQLLHCLQKTPP--PTLIFAERKQDVDAVHEYL 453
N+G A+ ++ Q +E P + +L L+ P +IF K+ D +
Sbjct: 364 NIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRN- 422
Query: 454 LLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPED 513
L + A AIHG K Q ER + FR G VLVATDVA++GLD +I+ V+NYD P
Sbjct: 423 LTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNG 482
Query: 514 IENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDM 566
+E+YVHRI D DL+ +L A QRVP + +M
Sbjct: 483 VEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 251 bits (614), Expect = 1e-66
Identities = 149/413 (36%), Positives = 214/413 (51%), Gaps = 15/413 (3%)
Query: 158 ETRHEMIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVL 217
E E + I V G PPP+ +F+ FP +LR + + G PTPIQ Q P +
Sbjct: 134 ELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAM 193
Query: 218 NGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDI 277
GRD++ IA TGSGKTL + +P + Q ++ GP L++ P+RELA Q +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRND--SRMGPTILVLSPTRELATQIQEE 249
Query: 278 IQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLN 337
F R +++ + CL GG + +++G I+VATPGRL D+L+ + + L
Sbjct: 250 AVKFGRSSRISCT-----CL-YGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLR 303
Query: 338 VCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTV 397
YL +DEADRM+DMGFE +R I +RQTL+++AT PK ++ A LV P V
Sbjct: 304 QISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Query: 398 NVGRAG--AASLTVRQDLEPAQPEARTVQLLHCLQKTPP--PTLIFAERKQDVDAVHEYL 453
N+G A+ ++ Q +E P + +L L+ P +IF K+ D +
Sbjct: 364 NIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRN- 422
Query: 454 LLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPED 513
L + A AIHG K Q ER + FR G VLVATDVA++GLD +I+ V+NYD P
Sbjct: 423 LTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNG 482
Query: 514 IENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDM 566
+E+YVHRI D DL+ +L A QRVP + +M
Sbjct: 483 VEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 249 bits (610), Expect = 4e-66
Identities = 145/440 (32%), Positives = 219/440 (49%), Gaps = 25/440 (5%)
Query: 139 YEEPIKTSWRPPRCILELPETRHEMIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLE 198
++ + W R + E+ E + R I +G P P+R+++ K +L+ +E
Sbjct: 271 FDMRVDRHWSDKR-LEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVE 329
Query: 199 AKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEG 258
G +KP+PIQ+ +P L RD+IGIA TGSGKT F LP++ + EG
Sbjct: 330 RAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEG 389
Query: 259 PYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIM 318
PY +++ P+RELA+Q + F +L R +GG ++ E + +G I+
Sbjct: 390 PYAVVMAPTRELAQQIEEETVKFAHYL------GFRVTSIVGGQSIEEQGLKITQGCEIV 443
Query: 319 VATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQ--------- 369
+ATPGRL+D L+++ LN C Y+ +DEADRMIDMGFE V +
Sbjct: 444 IATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEE 503
Query: 370 --------RQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEAR 421
R T +FSATMP ++ AR L PV V +G AG + + Q + + +
Sbjct: 504 ELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEK 563
Query: 422 TVQLLHCLQKTPPPT-LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFR 480
+L L + T ++F K++ D++ + L G +HGGK QE+R ++E FR
Sbjct: 564 FFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFR 623
Query: 481 RGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXP 540
+VLVATDV +G+D ++ HVINYDMP+ IE Y HRI
Sbjct: 624 AKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLH 683
Query: 541 DHSVLRDLVHLLREAGQRVP 560
D V DL +L ++ VP
Sbjct: 684 DTEVFYDLKQMLVQSNSAVP 703
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 246 bits (602), Expect = 3e-65
Identities = 153/409 (37%), Positives = 220/409 (53%), Gaps = 15/409 (3%)
Query: 162 EMIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRD 221
E+ R + + G++ P P TF+ P ILR L + G PTPIQ Q P L RD
Sbjct: 415 EIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRD 474
Query: 222 MIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHF 281
++ IA TGSGKTL + +P F L + + RN GP LI+ P+RELA Q D F
Sbjct: 475 IVAIAKTGSGKTLGYLIPA--FILLRHCRNDS-RN-GPTVLILAPTRELATQIQDEALRF 530
Query: 282 IRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRY 341
R +++ + CL GG ++ +++G I+VATPGRL D+L+ KM+
Sbjct: 531 GRSSRISCT-----CL-YGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSL 584
Query: 342 LCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGR 401
L +DEADRM+DMGFE +R I + +RQTL+++AT PK+++ A LV PV VN+GR
Sbjct: 585 LVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGR 644
Query: 402 AG--AASLTVRQDLE--PAQPEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKG 457
AA+ + Q +E P + R ++ + Q+ +IF K+ D + + +
Sbjct: 645 VDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLAR-SVGRH 703
Query: 458 VEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENY 517
AV IHG K Q ER + FR G+ VL+ATDVA++GLD +I+ VINYD P +E+Y
Sbjct: 704 FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDY 763
Query: 518 VHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDM 566
VHRI D DL+ +L A Q+VP + D+
Sbjct: 764 VHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDI 812
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 240 bits (588), Expect = 2e-63
Identities = 145/392 (36%), Positives = 219/392 (55%), Gaps = 17/392 (4%)
Query: 181 IRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPI 240
++TF P+ +L K +KP+PIQ P +L+GRD+IGIA TGSGKTL F +P
Sbjct: 115 LKTFAESNLPENVLDC--CKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 241 IMFCLEQEVKMPF-IRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSP-EIRSCLA 298
IM L++ K+ + P L++ P+RELA Q D+++ G P ++S
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLRE-------AGEPCGLKSICV 225
Query: 299 IGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEED 358
GG + + ++ GV I++ TPGRL D+++ ++RL+ ++ +DEADRM+DMGFEE
Sbjct: 226 YGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEP 285
Query: 359 VRTIFSYFAGQRQTLLFSATMPKKIQNFARSAL-VRPVTVNVGRAG-AASLTVRQDLEPA 416
VR I S RQ ++FSAT P + A+ + P+ V +G AA+ V Q +E
Sbjct: 286 VRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVL 345
Query: 417 QPEARTVQLLHCLQKTPPP----TLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEER 472
AR +L+ L+K L+FA K + + + +L +G +AV+IHG K Q ER
Sbjct: 346 DERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSER 405
Query: 473 SRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXX 532
+R++ F+ G +LVATDVA++GLD +++ VINY P E+YVHRI
Sbjct: 406 TRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGV 465
Query: 533 XXXXXXXPDHSVLRDLVHLLREAGQRVPGFLL 564
+ + +LV++LREAGQ VP LL
Sbjct: 466 AHTFFTPLNKGLAGELVNVLREAGQVVPADLL 497
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 230 bits (563), Expect = 2e-60
Identities = 138/344 (40%), Positives = 191/344 (55%), Gaps = 12/344 (3%)
Query: 163 MIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDM 222
M R + I VEG D P P++ FQ FP IL + G +PTPIQ QG P L GRD+
Sbjct: 146 MYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDL 205
Query: 223 IGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFI 282
IGIA TGSGKTL + LP ++ Q +++GP LI+ P+RELA Q IQ
Sbjct: 206 IGIAETGSGKTLAYLLPALVHVSAQP---RLGQDDGPIVLILAPTRELAVQ----IQEES 258
Query: 283 RHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYL 342
R L +RS GG + +++GV I++ATPGRL+DML+ + L YL
Sbjct: 259 RKFGLRSG--VRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYL 316
Query: 343 CMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRA 402
+DEADRM+DMGFE +R I S RQTLL+SAT P++++ AR L P +G
Sbjct: 317 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGST 376
Query: 403 G-AASLTVRQDLEPAQPEARTVQLLHCLQKTPPPT--LIFAERKQDVDAVHEYLLLKGVE 459
A+ ++ Q +E + +LL L++ + LIF E K+ D V L + G
Sbjct: 377 DLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWP 436
Query: 460 AVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQ 503
A+AIHG K Q ER R + F+ G ++ ATDVA++GL + I+
Sbjct: 437 ALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLVSSGIR 480
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 229 bits (561), Expect = 3e-60
Identities = 139/376 (36%), Positives = 200/376 (53%), Gaps = 15/376 (3%)
Query: 195 RGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFI 254
R + + G P+PIQ Q P + RD++ IA TGSGKTL + +P M Q +
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL--QRIHND-- 297
Query: 255 RNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKG 314
GP L++ P+RELA Q IQ + LK S +I GG ++ +++G
Sbjct: 298 SRMGPTILVLSPTRELATQ----IQ--VEALKFGKSSKISCACLYGGAPKGPQLKEIERG 351
Query: 315 VHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLL 374
V I+VATPGRL D+L+ K + L+ YL +DEADRM+DMGFE +R I + +RQTL+
Sbjct: 352 VDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLM 411
Query: 375 FSATMPKKIQNFARSALVRPVTVNVGRAG--AASLTVRQDLEPAQPEARTVQLLHCLQKT 432
++AT PK+++ A LV P VN+G A+ ++ Q +E P + +L L+
Sbjct: 412 YTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQ 471
Query: 433 PPPT--LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVAT 490
P + +IF K+ D + L + A AIHG K Q ER + FR G VLVAT
Sbjct: 472 EPGSKIIIFCSTKRMCDQLARN-LTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVAT 530
Query: 491 DVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVH 550
DVA++GLD +I+ V+NYD P +E+YVHRI D DL+
Sbjct: 531 DVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIK 590
Query: 551 LLREAGQRVPGFLLDM 566
+L A Q+VP + +M
Sbjct: 591 ILEGANQKVPPQVREM 606
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 217 bits (530), Expect = 2e-56
Identities = 126/412 (30%), Positives = 208/412 (50%), Gaps = 15/412 (3%)
Query: 162 EMIRNKLRILVEGDDP--PPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNG 219
+++R KL I V+G PPP+ TF P +L LE G PTPIQ+Q +PA L G
Sbjct: 88 QLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTG 147
Query: 220 RDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQ 279
+ ++ A TGSGKT F +PII C + P + P +++ P+REL Q D
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED--- 204
Query: 280 HFIRHLKLTGSP-EIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNV 338
K+ G ++ L +GG +S + +Q+GV +++ TPGR++D+L K + L+
Sbjct: 205 ----QAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDN 260
Query: 339 CRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVN 398
+DE D M+ GF + V IF + Q Q LLFSAT+ ++++ S + V+
Sbjct: 261 IMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGSLAKEIILVS 319
Query: 399 VGRAGAASLTVRQ---DLEPAQPEARTVQLLHCLQKTPPPTLIFAERKQDVDAV-HEYLL 454
+G + V Q ++ Q + + +L PP +++ + D + + +
Sbjct: 320 IGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITV 379
Query: 455 LKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDI 514
+ GV+A++IHG K +ER + +F GE VLV+T V +G+D ++ VI +DMP I
Sbjct: 380 VTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTI 439
Query: 515 ENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDM 566
+ Y+H I D ++ DLV L+ +G +P L+++
Sbjct: 440 KEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINL 491
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 204 bits (499), Expect = 1e-52
Identities = 142/452 (31%), Positives = 223/452 (49%), Gaps = 41/452 (9%)
Query: 113 EEEHILESVAQSKA-LMGVAELAKGIQYEEPIKTSWRPPRCILELPETRHEMIRNKLRIL 171
++E ++ V ++KA + + + +K I+YE K + + I + + R +L +
Sbjct: 327 DDEEFMKRVKKTKAEKLSLVDHSK-IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELK 385
Query: 172 VEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSG 231
V G D P PI+ + IL L+ +KP PIQ Q +P +++GRD IG+A TGSG
Sbjct: 386 VHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSG 445
Query: 232 KTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSP 291
KTL F LP++ +Q P +GP GL++ P+REL +Q + I+ F + L + P
Sbjct: 446 KTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVP 502
Query: 292 EIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDML---DKKMVRLNVCRYLCMDEAD 348
GG V++ + +++G I+V TPGR++D+L K+ L YL MDEAD
Sbjct: 503 ------VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEAD 556
Query: 349 RMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLT 408
RM DMGFE + I RQT+LFSAT P++++ AR L +PV + VG +
Sbjct: 557 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD 616
Query: 409 VRQDLEPAQPEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKD 468
+ Q +E R +LL L + +E KG V + +
Sbjct: 617 ITQLVEIRPESERFSRLLELLGEW-----------------YE----KGKVLVFV---RS 652
Query: 469 QEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXX 528
QE+ ++ F+ ++L+AT VA++GLD ++ V+N+D P E+YVHR+
Sbjct: 653 QEK---SISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAG 709
Query: 529 XXXXXXXXXXXPDHSVLRDLVHLLREAGQRVP 560
D DLV L + Q VP
Sbjct: 710 RKGCAVTFISEDDAKYAPDLVKALELSEQPVP 741
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 200 bits (488), Expect = 2e-51
Identities = 123/355 (34%), Positives = 188/355 (52%), Gaps = 17/355 (4%)
Query: 172 VEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSG 231
VE DD + P+ + LE +GI PIQ + L GRD+I A TG+G
Sbjct: 94 VEADDGEE--LAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTG 151
Query: 232 KTLVFTLPIIMFCLEQEVKMPFIRNEG--PYGLIICPSRELAKQTHDIIQHFIRHLKLTG 289
KTL F +PII E+ R G P L++ P+RELAKQ I+
Sbjct: 152 KTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--------S 203
Query: 290 SPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADR 349
+P + + GGV+ + + +GV ++V TPGR++D+++ + ++L YL +DEAD+
Sbjct: 204 APYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQ 263
Query: 350 MIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVN-VGRAG---AA 405
M+ +GFEE V +I +RQ++LFSATMP ++ AR L P+ ++ VG A
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 406 SLTVRQDLEPAQPEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHG 465
+ + + + + L + T++F + K+D D V L + A+HG
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEV-SLALSNSIATEALHG 382
Query: 466 GKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
Q +R R + AFR+G+ VLVATDVAS+GLD N+ VI+Y++P D E +VHR
Sbjct: 383 DISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHR 437
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 198 bits (484), Expect = 7e-51
Identities = 112/332 (33%), Positives = 183/332 (55%), Gaps = 15/332 (4%)
Query: 193 ILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMP 252
I++ L +KGI+K PIQ + + GRDMIG A TG+GKTL F +PII ++ K
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 253 FIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQ 312
R P L++ P+RELA+Q + +P + + GG + + M +
Sbjct: 175 --RGRNPLCLVLAPTRELARQVEKEFRE--------SAPSLDTICLYGGTPIGQQMRQLD 224
Query: 313 KGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQT 372
GV + V TPGR++D++ + + L+ +++ +DEAD+M+ +GF EDV I +RQ+
Sbjct: 225 YGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQS 284
Query: 373 LLFSATMPKKIQNFARSALVRPVTVN-VGRAG---AASLTVRQDLEPAQPEARTVQLLHC 428
++FSATMP I++ + L P+TV+ VG + A +T + + A + L
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344
Query: 429 LQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLV 488
++F + K+D D + Y L + + A+HG Q +R R + FR G ++LV
Sbjct: 345 EHAKGGKCIVFTQTKRDADRL-SYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILV 403
Query: 489 ATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
ATDVA++GLD N+ +I+Y++P + E +VHR
Sbjct: 404 ATDVAARGLDVPNVDLIIHYELPNNTETFVHR 435
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 197 bits (481), Expect = 2e-50
Identities = 121/369 (32%), Positives = 191/369 (51%), Gaps = 16/369 (4%)
Query: 183 TFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIM 242
TF + + +LR E G +KPTPIQ +P L GRD+ A TGSGKT F LP +
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 243 FCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGV 302
L + ++ R LI+ P+RELA Q H +IQ+ L +I+ L +GG+
Sbjct: 228 RLLFRPKRVFATRV-----LILTPTRELAVQIHSMIQN------LAQFTDIKCGLIVGGL 276
Query: 303 AVSECMEVVQKGVHIMVATPGRLMDMLDKKM-VRLNVCRYLCMDEADRMIDMGFEEDVRT 361
+V E V++ I+VATPGR++D L M V L+ L +DEADR++ GF ++
Sbjct: 277 SVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITE 336
Query: 362 IFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDL----EPAQ 417
+ +RQT+LFSATM ++++ + +L +P+ ++ + + +++ +
Sbjct: 337 LVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTRE 396
Query: 418 PEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVE 477
V L C + +IF+ KQ + L G++A +HG Q +R ++E
Sbjct: 397 ANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLE 456
Query: 478 AFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXX 537
FR+ E D L+ATDVA++GLD +Q VINY P +I++YVHR+
Sbjct: 457 LFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFV 516
Query: 538 XXPDHSVLR 546
D S+L+
Sbjct: 517 TDSDRSLLK 525
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 194 bits (474), Expect = 1e-49
Identities = 134/445 (30%), Positives = 215/445 (48%), Gaps = 31/445 (6%)
Query: 134 AKGIQYEEPIKTSW-RPPRCILELPETRHEMIRNKLRILVEGDDPPPPIRTFQHMKFPKG 192
AKG E+ K P+ L R + R + I V G++ PPP+++F + G
Sbjct: 88 AKGKAEEQITKNEIVENPKKELNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYG 147
Query: 193 ----ILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQE 248
ILR L G ++PTPIQ Q +P +L+GR+ A TGSGKT F P+++ +
Sbjct: 148 CEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLI-----K 202
Query: 249 VKMPFIRNEGPYGLIICPSRELAKQT----HDIIQHFIRHLKLTGSPEIRSCLAIGGVAV 304
+K P +G +I+ P+RELA QT +I+ H++L P +++
Sbjct: 203 LKRP--STDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTA-------- 252
Query: 305 SECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFS 364
+ + ++++TP RL + K + L+ YL +DE+D++ + + + +
Sbjct: 253 ----DFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308
Query: 365 YFAGQR-QTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTV 423
+ LFSAT+P ++ ARS + V V +GR AS TV+Q L A E +
Sbjct: 309 ACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKL 368
Query: 424 QLLH--CLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRR 481
L + PP LIF + K+ +++ L + + A IH ER AV+ FR
Sbjct: 369 LALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRA 428
Query: 482 GEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXPD 541
GEK VL+ATDV ++G+DF I VINYD P+ Y+HRI D
Sbjct: 429 GEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 488
Query: 542 HSVLRDLVHLLREAGQRVPGFLLDM 566
LR++ + + +G VP +++ +
Sbjct: 489 VPFLRNIANTMMSSGCEVPSWIMSL 513
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 193 bits (470), Expect = 3e-49
Identities = 110/332 (33%), Positives = 183/332 (55%), Gaps = 15/332 (4%)
Query: 193 ILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMP 252
I++ L+ +GI+K PIQ + + GRDMIG A TG+GKTL F +PII ++ K
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 253 FIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQ 312
R + P L++ P+RELA+Q + +P + + GG + + M +
Sbjct: 187 --RGKNPQCLVLAPTRELARQVEKEFRE--------SAPSLDTICLYGGTPIGQQMRELN 236
Query: 313 KGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQT 372
G+ + V TPGR++D++ + + L+ +++ +DEAD+M+ +GF EDV I +RQ+
Sbjct: 237 YGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQS 296
Query: 373 LLFSATMPKKIQNFARSALVRPVTVN-VGRAG---AASLTVRQDLEPAQPEARTVQLLHC 428
++FSATMP I++ + L P+T++ VG + A +T+ + A + L
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 429 LQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLV 488
++F + K+D D + + L K + A+HG Q +R R + FR G +LV
Sbjct: 357 EHGKGGKCIVFTQTKRDADRL-AFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILV 415
Query: 489 ATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
ATDVA++GLD N+ VI+Y++P + E +VHR
Sbjct: 416 ATDVAARGLDVPNVDLVIHYELPNNTETFVHR 447
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 190 bits (463), Expect = 2e-48
Identities = 114/343 (33%), Positives = 187/343 (54%), Gaps = 18/343 (5%)
Query: 184 FQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMF 243
F+ + + ++ KG + PTPIQ + MP +L+G D++ +A TGSGKT F +P++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 244 CLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHL-KLTGSPEIRSCLAIGGV 302
L+Q V +R LI+ P+R+LA+QT F + L K T ++R L +GG
Sbjct: 90 -LKQHVPQGGVR-----ALILSPTRDLAEQT----LKFTKELGKFT---DLRVSLLVGGD 136
Query: 303 AVSECMEVVQKGVHIMVATPGRLMDMLDK-KMVRLNVCRYLCMDEADRMIDMGFEEDVRT 361
++ + E + KG +++ATPGRLM +L + + L Y+ DEAD + MGF E +
Sbjct: 137 SMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQ 196
Query: 362 IFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEAR 421
I + + RQTLLFSAT+P + FA++ L P V + S ++ +PE +
Sbjct: 197 ILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEK 256
Query: 422 TVQLLHCLQK---TPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
LL+ +++ + TLIF K V+ V+ L+ +E +G DQ+ R V
Sbjct: 257 YSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSR 316
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
FR + +L+ TD+A++G+D + +VIN+D P + +VHR+
Sbjct: 317 FRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRV 359
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 189 bits (460), Expect = 5e-48
Identities = 114/347 (32%), Positives = 182/347 (52%), Gaps = 12/347 (3%)
Query: 181 IRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPI 240
++TF + + +++ E G + P+ IQ + +P L G+D+IG+A TGSGKT F +PI
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 241 IMFCLEQEVKMPFIRNEGP----YGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSC 296
+ LE + P + ++ P+RELA Q I + F L +R
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ---IAEQFEA---LGADISLRCA 121
Query: 297 LAIGGVAVSECMEVVQKGVHIMVATPGRLMD-MLDKKMVRLNVCRYLCMDEADRMIDMGF 355
+ +GG+ + + K H++VATPGRL D M D K L +YL +DEADR+++ F
Sbjct: 122 VLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDF 181
Query: 356 EEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEP 415
E+ + I +R+T LFSATM KK++ R+ L PV + + T++Q
Sbjct: 182 EKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRF 241
Query: 416 AQPEARTVQLLHCLQKTPPPT-LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSR 474
+ + L++ L + P T +IF + L G A+ I G Q +R
Sbjct: 242 VAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLG 301
Query: 475 AVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
A+ F+ GE ++LV TDVAS+GLD ++ VINYD+P + ++Y+HR+
Sbjct: 302 ALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRV 348
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 187 bits (456), Expect = 2e-47
Identities = 117/401 (29%), Positives = 192/401 (47%), Gaps = 16/401 (3%)
Query: 169 RILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFT 228
+++ E D PI +F M + +LRG+ G +KP+ IQ + + +L GRD+I A +
Sbjct: 22 KLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQS 81
Query: 229 GSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLT 288
G+GKT + L + C + ++ LI+ P+RELA QT IQ H +
Sbjct: 82 GTGKTSMIALSV---CQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANI- 132
Query: 289 GSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEAD 348
+ +C IGG +V E + ++ GVH++ TPGR+ DM+ ++ +R + L +DE+D
Sbjct: 133 ---QAHAC--IGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESD 187
Query: 349 RMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLT 408
M+ GF++ + ++ Y Q L SAT+P +I + PV + V R
Sbjct: 188 EMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEG 247
Query: 409 VRQDLEPAQPEARTVQLLHCLQKTPPPT--LIFAERKQDVDAVHEYLLLKGVEAVAIHGG 466
++Q + E L L T T +IF K+ VD + E + ++HG
Sbjct: 248 IKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGD 307
Query: 467 KDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXX 526
Q+ER + FR G+ VL+ TDV ++G+D + VINYD+P + E Y+HRI
Sbjct: 308 MPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 367
Query: 527 XXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDML 567
D +LRD+ +P + D++
Sbjct: 368 FGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 182 bits (443), Expect = 6e-46
Identities = 110/343 (32%), Positives = 176/343 (51%), Gaps = 14/343 (4%)
Query: 183 TFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIM 242
TF + + ++ G Q T IQ + +L G+D++G A TGSGKTL F +P +
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 243 FCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGV 302
++ F G ++ICP+RELA QT ++ + ++H T S + IGG
Sbjct: 150 LLFKER----FSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVS------MVIGGN 199
Query: 303 AVSECMEVVQKGVHIMVATPGRLMDMLDK-KMVRLNVCRYLCMDEADRMIDMGFEEDVRT 361
+ + G ++++ATPGRL+D L K + L +DEADR+++ FEED+
Sbjct: 200 NRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNK 259
Query: 362 IFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNV--GRAGAASLTVRQDLEPAQPE 419
I RQT LFSAT K+++ AR +L PV V+V GR + + Q +
Sbjct: 260 ILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSK 319
Query: 420 ARTVQLLHCLQKT-PPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
R + L+ L+K ++F + V E + + V+ IHGG DQ R++
Sbjct: 320 QRLILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFD 379
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
F + +K +L+ TDVA++GLD ++ +I YD P+ Y+HR+
Sbjct: 380 FMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRV 422
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 181 bits (441), Expect = 1e-45
Identities = 112/387 (28%), Positives = 193/387 (49%), Gaps = 16/387 (4%)
Query: 183 TFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIM 242
+F M + +LRG+ A G +KP+ IQ +G+ G D+I A +G+GKT F ++
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL- 98
Query: 243 FCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGV 302
Q++ I+ + L++ P+RELA+Q +++ +L + ++ +C +GG
Sbjct: 99 ----QQLDFSLIQCQA---LVLAPTRELAQQIEKVMRALGDYLGV----KVHAC--VGGT 145
Query: 303 AVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTI 362
+V E ++Q GVH++V TPGR+ DML ++ +R + + +DEAD M+ GF++ + I
Sbjct: 146 SVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDI 205
Query: 363 FSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEART 422
F + Q +FSATMP + R + +PV + V R ++Q + E
Sbjct: 206 FQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWK 265
Query: 423 VQLLHCLQKTPPPT--LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFR 480
++ L L +T T +IF ++ VD + + + + A HG DQ R + FR
Sbjct: 266 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 325
Query: 481 RGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXP 540
G VL+ TD+ ++G+D + VIN+D+P ENY+HRI
Sbjct: 326 SGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 385
Query: 541 DHSVLRDLVHLLREAGQRVPGFLLDML 567
D +L D+ + +P + D+L
Sbjct: 386 DERMLFDIQKFYNVVVEELPSNVADLL 412
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 181 bits (440), Expect = 1e-45
Identities = 105/361 (29%), Positives = 182/361 (50%), Gaps = 11/361 (3%)
Query: 210 VQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRE 269
+Q +PA L G+ ++ A TGSGKT F +PII C + P + P +++ P+RE
Sbjct: 1 MQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 60
Query: 270 LAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDML 329
L Q D + + G P ++ L +GG +S + +Q+GV +++ TPGR++D+L
Sbjct: 61 LCVQVEDQAKMLGK-----GLP-FKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLL 114
Query: 330 DKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARS 389
K + L+ +DE D M+ GF + V IF + Q Q LLFSAT+ ++++ S
Sbjct: 115 SKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGS 173
Query: 390 ALVRPVTVNVGRAGAASLTVRQD---LEPAQPEARTVQLLHCLQKTPPPTLIFAERKQDV 446
+ V++G + V Q ++ Q + + +L PP +++ +
Sbjct: 174 LAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGA 233
Query: 447 DAVHEYL-LLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHV 505
D + + ++ GV+A++IHG K +ER + +F GE VLV+T V +G+D ++ V
Sbjct: 234 DLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV 293
Query: 506 INYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLD 565
I +DMP I+ Y+H I D ++ DLV L+ +G +P L++
Sbjct: 294 IVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELIN 353
Query: 566 M 566
+
Sbjct: 354 L 354
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 180 bits (439), Expect = 2e-45
Identities = 109/347 (31%), Positives = 185/347 (53%), Gaps = 19/347 (5%)
Query: 182 RTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
+TF+ + + ++ G + T IQ + +P ++ G D++G A TGSGKTL F +P +
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 242 MFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIR-HLKLTGSPEIRSCLAIG 300
E ++ F G L+ICP+RELA Q++ + + ++ H + G IG
Sbjct: 214 ----ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGK-------VIG 262
Query: 301 GVAVSECMEVVQKGVHIMVATPGRLMDMLDKK--MVRLNVCRYLCMDEADRMIDMGFEED 358
G E++ KGV+++VATPGRL+D L+ + N+ ++L MDEADR+++ FEED
Sbjct: 263 GEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNL-KFLVMDEADRILEQNFEED 321
Query: 359 VRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNV--GRAGAASLTVRQDLEPA 416
++ I + RQT LFSAT K+++ AR +L PV ++V GR + + Q
Sbjct: 322 LKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVV 381
Query: 417 QPEARTVQLLHCLQK--TPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSR 474
R + LL L++ ++F + E + + I GG DQ +R+
Sbjct: 382 PSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTP 441
Query: 475 AVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
F + E +L+ T+VA++GLDF ++ ++ YD P++ +Y+HR+
Sbjct: 442 TFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRV 488
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 180 bits (439), Expect = 2e-45
Identities = 110/387 (28%), Positives = 193/387 (49%), Gaps = 16/387 (4%)
Query: 183 TFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIM 242
+F M+ +LRG+ A G +KP+ IQ +G+ G D+I A +G+GKT F ++
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVL- 100
Query: 243 FCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGV 302
Q++ + ++ + L++ P+RELA+Q +++ +L + + ++C +GG
Sbjct: 101 ----QQLDISLVQCQA---LVLAPTRELAQQIEKVMRALGDYLGV----KAQAC--VGGT 147
Query: 303 AVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTI 362
+V E V+Q GVH++V TPGR+ D+L ++ +R + + +DEAD M+ GF++ + I
Sbjct: 148 SVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDI 207
Query: 363 FSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEART 422
F + Q +FSATMP + R + +PV + V R ++Q E
Sbjct: 208 FQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWK 267
Query: 423 VQLLHCLQKTPPPT--LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFR 480
++ L L +T T +IF ++ VD + + + + A HG DQ R + FR
Sbjct: 268 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 327
Query: 481 RGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXP 540
G VL+ TD+ ++G+D + VIN+D+P ENY+HRI
Sbjct: 328 SGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSE 387
Query: 541 DHSVLRDLVHLLREAGQRVPGFLLDML 567
D ++ D+ + +P + D+L
Sbjct: 388 DERMMADIQRFYNVVVEELPSNVADLL 414
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 179 bits (436), Expect = 4e-45
Identities = 113/387 (29%), Positives = 192/387 (49%), Gaps = 16/387 (4%)
Query: 183 TFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIM 242
+F M + +LRG+ A G +KP+ IQ +G+ G D+I A +G+GKT F ++
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL- 98
Query: 243 FCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGV 302
Q++ ++ + L++ P+RELA+Q I+ +R L ++ +C +GG
Sbjct: 99 ----QQLDYALLQCQA---LVLAPTRELAQQ----IEKVMRALGDYQGVKVHAC--VGGT 145
Query: 303 AVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTI 362
+V E ++Q GVH++V TPGR+ DML ++ +R + + +DEAD M+ GF++ + I
Sbjct: 146 SVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDI 205
Query: 363 FSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEART 422
F + Q +FSATMP + R + +PV + V R ++Q + E
Sbjct: 206 FQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWK 265
Query: 423 VQLLHCLQKTPPPT--LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFR 480
++ L L +T T +IF ++ VD + + + + A HG DQ R + FR
Sbjct: 266 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 325
Query: 481 RGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXP 540
G VL+ TD+ ++G+D + VIN+D+P ENY+HRI
Sbjct: 326 SGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLD 385
Query: 541 DHSVLRDLVHLLREAGQRVPGFLLDML 567
D +L D+ + +P + D+L
Sbjct: 386 DQRMLFDIQKFYNVVVEELPSNVADLL 412
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 174 bits (424), Expect = 1e-43
Identities = 112/349 (32%), Positives = 182/349 (52%), Gaps = 18/349 (5%)
Query: 184 FQHMKFP--KGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
F +K P + I+ L+ G + TP+Q + +P + + +D++ A TGSGKTL F LP I
Sbjct: 16 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
Query: 242 MFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGG 301
P + G+II P+REL+ Q H + + F+ L P + S L +GG
Sbjct: 76 EIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTL-----PNVNSVLLVGG 128
Query: 302 VAVSECMEVVQK-GVHIMVATPGRLMDMLDK-KMVRLNVCRYLCMDEADRMIDMGFEEDV 359
V M +++ G ++++ TPGRL DM+ + + + L +DEADR++DMGF++ V
Sbjct: 129 REVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQV 188
Query: 360 RTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPE 419
I S QR+T LFSAT + + + A++ L + V G + + E + E
Sbjct: 189 NYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCE 248
Query: 420 A--RTVQLLHCLQKTPPPTLI-FAERKQDVD----AVHEYLLLKGVEAVAIHGGKDQEER 472
A ++ QL+H L + L+ F VD + + LK + + HG DQ+ R
Sbjct: 249 ADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGR 308
Query: 473 SRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
A+ +F VL+ TDVA++GLD I +V+ YD P+D + ++HR+
Sbjct: 309 DTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRV 357
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 173 bits (420), Expect = 4e-43
Identities = 113/330 (34%), Positives = 177/330 (53%), Gaps = 25/330 (7%)
Query: 201 GIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPY 260
G++KPTP+Q +P +L GRD++G+A TGSGKT F LPI+ E P+ G +
Sbjct: 77 GMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAED----PY----GVF 128
Query: 261 GLIICPSRELAKQTHDIIQHFIRHLKLTGSP-EIRSCLAIGGV-AVSECMEVVQKGVHIM 318
L++ P+RELA Q + + F K GS +R + +GG+ +++ M +V + HI+
Sbjct: 129 ALVVTPTRELAFQ---LAEQF----KALGSCLNLRCSVIVGGMDMLTQTMSLVSRP-HIV 180
Query: 319 VATPGRLMDMLDKKMVRLNV---CRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLF 375
+ TPGR+ +L+ V ++L +DEADR++D+GF++++RTIF RQTLLF
Sbjct: 181 ITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLF 240
Query: 376 SATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTVQLLHCLQKTPPP 435
SATM +Q + + T+ Q +A+ + L+H L +
Sbjct: 241 SATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDK 300
Query: 436 ----TLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATD 491
+IF + + L VE +A+H Q R A+ F+ G+ +L+ATD
Sbjct: 301 GIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATD 360
Query: 492 VASKGLDFANIQHVINYDMPEDIENYVHRI 521
VAS+GLD + VINYD+P D +YVHR+
Sbjct: 361 VASRGLDIPTVDLVINYDIPRDPRDYVHRV 390
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 172 bits (418), Expect = 7e-43
Identities = 117/399 (29%), Positives = 199/399 (49%), Gaps = 37/399 (9%)
Query: 130 VAELAKGIQYE--EPIKTSWRPPRCILELPETRHEMIRNKLRILVEGDDPPPPIRTFQHM 187
V E+ K +Q E +P W+ R L P+TR+ R + +G++ F+
Sbjct: 88 VVEVEKTVQSEVIDPNSEDWKA-RLKLPAPDTRY---RTEDVTATKGNE-------FEDY 136
Query: 188 KFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQ 247
+ +L G+ KG ++P+PIQ + +P L GRD++ A G+GKT F +P++ ++Q
Sbjct: 137 FLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK-IDQ 195
Query: 248 EVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSEC 307
+ N +II P+RELA QT + + +HLK I+ + GG ++ +
Sbjct: 196 D-------NNVIQAVIIVPTRELALQTSQVCKELGKHLK------IQVMVTTGGTSLKDD 242
Query: 308 MEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFA 367
+ + + VH++V TPGR++D+ K + L C L MDEAD+++ F+ V + S+
Sbjct: 243 IMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLP 302
Query: 368 GQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTVQLLH 427
RQ L+FSAT P +++F L P +N+ LT++ + Q +H
Sbjct: 303 ESRQILMFSATFPVTVKDFKDRFLTNPYVINL----MDELTLK-GITQFYAFVEERQKIH 357
Query: 428 CL-----QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRG 482
CL + ++IF V+ + + + G IH Q+ R+R FR G
Sbjct: 358 CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 417
Query: 483 EKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
LV TD+ ++G+D + VIN+D P++ E Y+HR+
Sbjct: 418 ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRV 456
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 172 bits (418), Expect = 7e-43
Identities = 117/399 (29%), Positives = 199/399 (49%), Gaps = 37/399 (9%)
Query: 130 VAELAKGIQYE--EPIKTSWRPPRCILELPETRHEMIRNKLRILVEGDDPPPPIRTFQHM 187
V E+ K +Q E +P W+ R L P+TR+ R + +G++ F+
Sbjct: 88 VVEVEKTVQSEVIDPNSEDWKA-RLKLPAPDTRY---RTEDVTATKGNE-------FEDY 136
Query: 188 KFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQ 247
+ +L G+ KG ++P+PIQ + +P L GRD++ A G+GKT F +P++ ++Q
Sbjct: 137 FLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK-IDQ 195
Query: 248 EVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSEC 307
+ N +II P+RELA QT + + +HLK I+ + GG ++ +
Sbjct: 196 D-------NNVIQAVIIVPTRELALQTSQVCKELGKHLK------IQVMVTTGGTSLKDD 242
Query: 308 MEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFA 367
+ + + VH++V TPGR++D+ K + L C L MDEAD+++ F+ V + S+
Sbjct: 243 IMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLP 302
Query: 368 GQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTVQLLH 427
RQ L+FSAT P +++F L P +N+ LT++ + Q +H
Sbjct: 303 ESRQILMFSATFPVTVKDFKDRFLTNPYVINL----MDELTLK-GITQFYAFVEERQKIH 357
Query: 428 CL-----QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRG 482
CL + ++IF V+ + + + G IH Q+ R+R FR G
Sbjct: 358 CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 417
Query: 483 EKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
LV TD+ ++G+D + VIN+D P++ E Y+HR+
Sbjct: 418 ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRV 456
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 168 bits (408), Expect = 1e-41
Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 16/344 (4%)
Query: 180 PIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLP 239
PI++F M +LRG+ G +KP+ IQ + + +L GRD+I A +G+GKT + +
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 240 IIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAI 299
+ K+ L++ PSRELA QT IQ H + + +C I
Sbjct: 80 VCQIVNISSRKVQV--------LVLSPSRELASQTEKTIQAIGAHTNI----QAHAC--I 125
Query: 300 GGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDV 359
GG ++ E ++ +++GVH + TPGR+ DM+ + ++ + L +DE+D M+ G ++ +
Sbjct: 126 GGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQI 185
Query: 360 RTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPE 419
++ Q L SAT+P++I + PV + V ++Q E
Sbjct: 186 YDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKE 245
Query: 420 ARTVQLLHCL--QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVE 477
L L + T +IF +Q VD + E + ++HG K Q+ER +
Sbjct: 246 EWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMN 305
Query: 478 AFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
FR + VL+A+DV ++G+D + HVINYD+P + E Y+HRI
Sbjct: 306 QFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRI 349
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 162 bits (394), Expect = 5e-40
Identities = 103/347 (29%), Positives = 178/347 (51%), Gaps = 27/347 (7%)
Query: 193 ILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMP 252
I+ L + TP+Q +P + + +D+ A TGSGKTL F +P++ L + P
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEI-LRRSTSFP 85
Query: 253 FIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQ 312
+ G+II P+REL+ Q +++ Q F+ L + S L +GG V M++++
Sbjct: 86 -PKPHQVMGVIISPTRELSTQIYNVAQPFVSTLA-----NVNSVLLVGGREVKADMKIIE 139
Query: 313 K-GVHIMVATPGRLMDMLDK-KMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQR 370
+ G ++++ TPGRL D++++ +++ L +DEADR+++MGF+ V I S QR
Sbjct: 140 EEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQR 199
Query: 371 QTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTVQLLHC-- 428
+T LFSAT + ++ A++ L PV V V RA + S + +Q P ++ + C
Sbjct: 200 RTGLFSATQTEGVEELAKAGLRNPVRVEV-RAKSKSESSQQLTNSKTPSGLHLEYMECEA 258
Query: 429 -----------LQKTPPPTLIFAERKQDVD----AVHEYLLLKGVEAVAIHGGKDQEERS 473
++ + ++F VD + + LK + + IHG Q R
Sbjct: 259 DKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARD 318
Query: 474 RAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
+A+ +F + L+ TDVA++GLD I +V+ YD P+D + HR
Sbjct: 319 KALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHR 365
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 162 bits (393), Expect = 7e-40
Identities = 118/333 (35%), Positives = 176/333 (52%), Gaps = 19/333 (5%)
Query: 197 LEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRN 256
L+A GI+ PIQ VL+G D++G A TG GKTL F LPI+ + K
Sbjct: 111 LKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMG 170
Query: 257 EG--PYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKG 314
G P L++ P+RELAKQ + F + GS + SC GG + +++G
Sbjct: 171 YGRSPSVLVLLPTRELAKQ---VAADFDAY---GGSLGLSSCCLYGGDSYPVQEGKLKRG 224
Query: 315 VHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYF--AGQRQT 372
V I+V TPGR+ D ++++ + + ++ +DEAD M+ MGF EDV I + + QT
Sbjct: 225 VDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQT 284
Query: 373 LLFSATMPKKIQNFARSALVR-PVTVN-VGR-AGAASLTVRQDLEPAQPE--ARTVQLLH 427
LLFSAT+P ++N + L R T++ VG AS +VR P AR + +
Sbjct: 285 LLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDII 344
Query: 428 CLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVL 487
+ T+IFAE K V + LL G + A+HG Q +R + FR G+ L
Sbjct: 345 SCYSSGGQTIIFAETKVQVSELSG--LLDG--SRALHGEIPQSQREVTLAGFRNGKFATL 400
Query: 488 VATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
VAT+VA++GLD ++Q +I + P ++E Y+HR
Sbjct: 401 VATNVAARGLDINDVQLIIQCEPPREVEAYIHR 433
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 159 bits (387), Expect = 4e-39
Identities = 104/343 (30%), Positives = 172/343 (50%), Gaps = 24/343 (6%)
Query: 184 FQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMF 243
F+ + +LRG+ KG +KP+PIQ + +P L G D++ A G+GKT F +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTL-- 213
Query: 244 CLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVA 303
E P N +I+ P+RELA QT + + ++LK I + GG +
Sbjct: 214 ----EKIDP--ENNVIQAVILVPTRELALQTSQVCKELSKYLK------IEVMVTTGGTS 261
Query: 304 VSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIF 363
+ + + + + VH++V TPGR++D+ K + L C L MDEAD+++ + F+ + +
Sbjct: 262 LRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELI 321
Query: 364 SYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTV 423
+ RQ L+FSAT P +++F L +P +N+ + V Q A E R
Sbjct: 322 QFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINL-MDQLTLMGVTQYY--AFVEER-- 376
Query: 424 QLLHCL-----QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
Q +HCL + ++IF V+ + + + G IH Q+ R+R
Sbjct: 377 QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHD 436
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
FR G LV TD+ ++G+D + VIN+D P E+Y+HR+
Sbjct: 437 FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRV 479
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 156 bits (379), Expect = 4e-38
Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 24/343 (6%)
Query: 184 FQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMF 243
F+ + +L+G+ KG +KP+PIQ + +P L G D++ A G+GKT F +P++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL-- 183
Query: 244 CLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVA 303
E P N +I+ P+RELA QT + + ++L I+ + GG +
Sbjct: 184 ----EKIDP--NNNVIQAMILVPTRELALQTSQVCKELSKYLN------IQVMVTTGGTS 231
Query: 304 VSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIF 363
+ + + + + VH++V TPGR++D+ K + L C L MDEAD+++ F+ + +
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELI 291
Query: 364 SYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTV 423
+ RQ L+FSAT P ++ F L +P +N+ + V Q A E R
Sbjct: 292 QFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINL-MDQLTLMGVTQYY--AFVEER-- 346
Query: 424 QLLHCL-----QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
Q +HCL + ++IF V+ + + + G IH Q+ R+R
Sbjct: 347 QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHE 406
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
FR G LV TD+ ++G+D + VIN+D P E+Y+HR+
Sbjct: 407 FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRV 449
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 156 bits (379), Expect = 4e-38
Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 24/343 (6%)
Query: 184 FQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMF 243
F+ + +L+G+ KG +KP+PIQ + +P L G D++ A G+GKT F +P++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL-- 183
Query: 244 CLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVA 303
E P N +I+ P+RELA QT + + ++L I+ + GG +
Sbjct: 184 ----EKIDP--NNNVIQAMILVPTRELALQTSQVCKELSKYLN------IQVMVTTGGTS 231
Query: 304 VSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIF 363
+ + + + + VH++V TPGR++D+ K + L C L MDEAD+++ F+ + +
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELI 291
Query: 364 SYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTV 423
+ RQ L+FSAT P ++ F L +P +N+ + V Q A E R
Sbjct: 292 QFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINL-MDQLTLMGVTQYY--AFVEER-- 346
Query: 424 QLLHCL-----QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
Q +HCL + ++IF V+ + + + G IH Q+ R+R
Sbjct: 347 QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHE 406
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
FR G LV TD+ ++G+D + VIN+D P E+Y+HR+
Sbjct: 407 FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRV 449
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 156 bits (378), Expect = 5e-38
Identities = 117/351 (33%), Positives = 174/351 (49%), Gaps = 24/351 (6%)
Query: 181 IRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPI 240
+R F + RGL+ T +Q +P L GRD++G A TGSGKTL F +PI
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 241 IMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIG 300
LE+ + + +G +II P+RELA QT ++ + K + L IG
Sbjct: 130 ----LEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAG------LLIG 179
Query: 301 GVAVSECMEVVQKGVH---IMVATPGRLMDMLDKKM-VRLNVCRYLCMDEADRMIDMGFE 356
G E ++V ++ VH I+V PGRL+ +D+ + L +DEADR++D F+
Sbjct: 180 G---REGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFK 236
Query: 357 EDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNV-GRAGAASLTVRQDLEP 415
+ I S RQTLLFSAT KK+++ AR +L P ++V A A+ T
Sbjct: 237 GQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVM 296
Query: 416 AQPEARTVQLLHCLQKT--PPPTLIFAERKQDVDAVHEYL--LLKGVEAVAIHGGKDQEE 471
P + + +L KT L+F K+ V VHE L G+ ++HG QE+
Sbjct: 297 IVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEK 356
Query: 472 RSRAVEAFRRGEKDVLVATDVASKGLDFAN-IQHVINYDMPEDIENYVHRI 521
R F + VL TDV ++GLDF + V+ D PED+ +Y+HR+
Sbjct: 357 RMGVYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRV 406
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 151 bits (367), Expect = 1e-36
Identities = 104/350 (29%), Positives = 166/350 (47%), Gaps = 17/350 (4%)
Query: 184 FQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMF 243
F H L+ ++ G + T +Q +P +L G+D++ A TG+GKT+ F LP I
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 244 CLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVA 303
++ P + L+ICP+RELA Q +++ P I + IGG
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKY-----HPSIGVQVVIGGTR 170
Query: 304 VS-ECMEVVQKGVHIMVATPGRLMDMLDKK---MVRLNVCRYLCMDEADRMIDMGFEEDV 359
+ E + I+VATPGRL D ++ RL + L +DEAD ++DMGF +D+
Sbjct: 171 LGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDI 230
Query: 360 RTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRP-VTVNVGRAGAASL--TVRQ----- 411
I S +RQT LFSAT+P++++ AL R VN G VRQ
Sbjct: 231 ERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIA 290
Query: 412 DLEPAQPEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEE 471
L+ T+ H + ++F V + L + IH K Q
Sbjct: 291 SLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSY 350
Query: 472 RSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
R+R FR+ + +LV +DV+++G+D+ ++ V+ +P+D E Y+HR+
Sbjct: 351 RTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRL 400
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 151 bits (367), Expect = 1e-36
Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 19/341 (5%)
Query: 194 LRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPF 253
L+ ++ G + T +Q +P +L G+D++ A TG+GKT+ F LP I ++
Sbjct: 394 LKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRD 453
Query: 254 IRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAV-SECMEVVQ 312
R L++CP+RELA Q +++ P I + IGG + +E +
Sbjct: 454 SRQPPIIVLVVCPTRELASQAAAEANTLLKY-----HPSIGVQVVIGGTKLPTEQRRMQT 508
Query: 313 KGVHIMVATPGRLMDMLDKKM---VRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQ 369
I+VATPGRL D ++ RL + L +DEAD ++DMGF D+ I + Q
Sbjct: 509 NPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQ 568
Query: 370 RQTLLFSATMPKKIQNFARSALVRP-VTVNVGRAGAASL--TVRQDLEPAQPEARTVQLL 426
RQT LFSAT+P++++ AL R +N + G+ V Q A + R LL
Sbjct: 569 RQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLD-RHFSLL 627
Query: 427 HCLQK------TPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFR 480
H L K +IF V + L + IH K Q R+R + FR
Sbjct: 628 HVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFR 687
Query: 481 RGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
+ + +LV +DV+++G+D+ ++ V+ +P D E Y+HR+
Sbjct: 688 KSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRL 728
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 148 bits (358), Expect = 1e-35
Identities = 104/340 (30%), Positives = 164/340 (48%), Gaps = 17/340 (5%)
Query: 194 LRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPF 253
L+G+E G + T +Q +P +L G+D++ A TG+GKT+ F LP I ++
Sbjct: 92 LKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRD 151
Query: 254 IRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQK 313
R+ L++CP+RELA Q +++ P I + IGG + +QK
Sbjct: 152 NRHPPIIVLVVCPTRELACQAAAEANILLKY-----HPSIGVQVVIGGTKLPTEQRRLQK 206
Query: 314 G-VHIMVATPGRLMDMLDKKM---VRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQ 369
I+VATPGRL D +D RL + L +DEAD ++DMGF ++ I + Q
Sbjct: 207 SPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQ 266
Query: 370 RQTLLFSATMPKKIQNFARSALVRPVT-VNVGRAGAASLTVR-QDLEPAQPEARTVQLLH 427
RQT LFSAT+ +++ AL R VN + GA + + R LL+
Sbjct: 267 RQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLY 326
Query: 428 CLQK------TPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRR 481
L K +IF V + L + IH K Q R+R + FR+
Sbjct: 327 GLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRK 386
Query: 482 GEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
+ +LV +DV+++G+D+ ++ V+ +P D E Y+HR+
Sbjct: 387 SKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRL 426
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 143 bits (347), Expect = 3e-34
Identities = 98/334 (29%), Positives = 173/334 (51%), Gaps = 19/334 (5%)
Query: 193 ILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMP 252
+LR + G + P+ +Q + +P + G D+I A +G GKT VF L L+Q P
Sbjct: 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST----LQQIEPSP 112
Query: 253 FIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQ 312
+ L++C +RELA Q I F+R T P+ + + GGV + ++++
Sbjct: 113 GQVS----ALVLCHTRELAYQ---ICNEFVRFS--TYLPDTKVSVFYGGVNIKIHKDLLK 163
Query: 313 KGV-HIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMID-MGFEEDVRTIFSYFAGQR 370
HI+V TPGR++ + +K + L R+ +DE D+M++ + DV+ IF +
Sbjct: 164 NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
Query: 371 QTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASL--TVRQDLEPAQPEARTVQLLHC 428
Q ++FSAT+ K+I+ + + P+ + V +L V+ ++ ++ E +T +L
Sbjct: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KTRKLNDL 282
Query: 429 LQKTP-PPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVL 487
L +IF + +++ L+ ++ IH G QEER ++F+ G K +L
Sbjct: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRIL 342
Query: 488 VATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
VATD+ +G+D + VINYDMP+ + Y+HR+
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 142 bits (345), Expect = 5e-34
Identities = 98/335 (29%), Positives = 172/335 (51%), Gaps = 21/335 (6%)
Query: 193 ILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMP 252
+LR + G + P+ +Q + +P + G D+I A +G GKT VF L L+Q P
Sbjct: 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST----LQQIEPSP 112
Query: 253 FIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQ 312
+ L++C +RELA Q I F+R T P+ + + GGV + ++++
Sbjct: 113 GQVS----ALVLCHTRELAYQ---ICNEFVRFS--TYLPDTKVSVFYGGVNIKIHKDLLK 163
Query: 313 KGV-HIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMID-MGFEEDVRTIFSYFAGQR 370
HI+V TPGR++ + +K + L R+ +DE D+M++ + DV+ IF +
Sbjct: 164 NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
Query: 371 QTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASL--TVRQDLEPAQPEA--RTVQLL 426
Q ++FSAT+ K+I+ + + P+ + V +L V+ ++ ++ E + LL
Sbjct: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLL 283
Query: 427 HCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDV 486
L +IF + +++ L+ ++ IH G QEER ++F+ G K +
Sbjct: 284 DALDFNQ--VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRI 341
Query: 487 LVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
LVATD+ +G+D + VINYDMP+ + Y+HR+
Sbjct: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 142 bits (345), Expect = 5e-34
Identities = 104/342 (30%), Positives = 169/342 (49%), Gaps = 20/342 (5%)
Query: 194 LRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPF 253
L+ L A GI K T +Q + L+G+D + A TG+GK++ F LP I L+
Sbjct: 340 LKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKG 399
Query: 254 IRNEGP-YGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVS-ECMEVV 311
+ P + LI+CP+RELA Q I LK +++ IGG + +
Sbjct: 400 VNKVAPIFALILCPTRELASQ---IAAEGKALLKFHDGIGVQTL--IGGTRFKLDQQRLE 454
Query: 312 QKGVHIMVATPGRLMDMLDKKM---VRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAG 368
+ I++ATPGRL+D ++ K RL + +DEAD ++D+GF DV I
Sbjct: 455 SEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPR 514
Query: 369 QRQTLLFSATMPKKIQNFARSALVRP----VTVNVGRAGAASLTVRQDLEPAQPEARTVQ 424
QRQ+LLFSAT+PK+++ ++ L R T+ +G VRQ A E+
Sbjct: 515 QRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHD-KVRQSCIVAPHESHFHL 573
Query: 425 LLHCLQK----TPP-PTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAF 479
+ H L++ TP ++F ++ L + IH K Q R+R + F
Sbjct: 574 VPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEF 633
Query: 480 RRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
+ + +LV +DV+++G+++ ++ VI +P D E Y+HR+
Sbjct: 634 KESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRL 675
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 138 bits (335), Expect = 8e-33
Identities = 96/356 (26%), Positives = 167/356 (46%), Gaps = 24/356 (6%)
Query: 181 IRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPI 240
+ FQ + + ++ L+ I+ PT IQ G+PAV+ + ++ + TGSGKTL + LPI
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 241 IMFCLEQEVKM-PFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAI 299
+ E E + + P +++CP+REL++Q + + + H + RS L
Sbjct: 171 VQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHAR------FRSILVS 224
Query: 300 GGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDV 359
GG + + + + ++V TPGR++ +++ + YL +DEAD M D GF ++
Sbjct: 225 GGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284
Query: 360 RTIFSYFAGQR---------QTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVR 410
R + QR QT+L +ATM +Q + R
Sbjct: 285 RKFLAPL-NQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANAR 343
Query: 411 QD-LEPAQPEARTVQLLHCLQKT---PPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGG 466
D ++ + E + LL L+ + ++F AV YL + V HG
Sbjct: 344 HDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGE 403
Query: 467 KDQEERSRAVEAFRRGEKD--VLVATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
E+R ++ F+ E D LV TD+A++GLD ++ HV+ +D P++ +Y+HR
Sbjct: 404 VPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHR 458
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 134 bits (324), Expect = 2e-31
Identities = 99/342 (28%), Positives = 168/342 (49%), Gaps = 20/342 (5%)
Query: 194 LRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPF 253
L+ L A GI K T +Q + L+G+D + A TG+GK++ F LP I L+
Sbjct: 387 LKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKG 446
Query: 254 IRNEGP-YGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVS-ECMEVV 311
+ P + LI+CP+RELA Q + +++ G + IGG + +
Sbjct: 447 VHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTL-----IGGTRFRLDQQRLE 501
Query: 312 QKGVHIMVATPGRLMDMLDKKM---VRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAG 368
+ I++ATPGRL+D ++ K RL + +DEAD ++D+GF+ DV I
Sbjct: 502 SEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPR 561
Query: 369 QRQTLLFSATMPKKIQNFARSALVRP----VTVNVGRAGAASLTVRQDLEPAQPEARTVQ 424
QRQ+LLFSAT+PK+++ ++ L R T+ +G V+Q A E+
Sbjct: 562 QRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHD-KVKQSCIVAPHESHFHL 620
Query: 425 LLHCLQK---TPP--PTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAF 479
+ H L++ P ++F ++ L + IH K Q R+ + F
Sbjct: 621 VPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEF 680
Query: 480 RRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
+ + +LV +DV+++G+++ ++ VI +P D E Y+HR+
Sbjct: 681 KESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRL 722
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 131 bits (317), Expect = 1e-30
Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 35/389 (8%)
Query: 150 PRCILELPETRHEMIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAK-GIQKPTPI 208
P ILE PE + ++ + GD P F+ + +++GL + +KP+ I
Sbjct: 65 PDSILEEPED------SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKI 118
Query: 209 QVQGMPAVLNG--RDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICP 266
Q +P ++ + +I A GSGKT F L ++ V P +R P L ICP
Sbjct: 119 QAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGML-----SRVD-PTLRE--PQALCICP 170
Query: 267 SRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLM 326
+RELA Q +++Q + +T + G A + V H+++ TPG L
Sbjct: 171 TRELANQNMEVLQKMGKFTGITAELAVPDSTR-GAPAATRGAPV---SAHVVIGTPGTLK 226
Query: 327 DMLDKKMVRLNVCRYLCMDEADRMIDM-GFEEDVRTIFSYFAGQR---QTLLFSATMPKK 382
+ K + LN + L DEAD M+ GF +D I Q LLFSAT +
Sbjct: 227 KWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNET 286
Query: 383 IQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTVQLL--HCLQKTP-PPTLIF 439
+++F + P + V R A +V+Q E ++++ ++ T+IF
Sbjct: 287 VKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIF 346
Query: 440 AERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDF 499
+ K VH+ L G + ++HG + +R + V+ F+ VL+ATDV ++G D
Sbjct: 347 VKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQ 406
Query: 500 ANIQHVINYDMP-------EDIENYVHRI 521
+ V+NY++P D E Y+HR+
Sbjct: 407 QRVNLVVNYNLPTKYETGEPDYEVYLHRV 435
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 128 bits (309), Expect = 1e-29
Identities = 91/306 (29%), Positives = 158/306 (51%), Gaps = 19/306 (6%)
Query: 221 DMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQH 280
D+I A +G GKT VF L L+Q P + L++C +RELA Q I
Sbjct: 2 DVICQAKSGMGKTAVFVLST----LQQIEPSPGQVS----ALVLCHTRELAYQ---ICNE 50
Query: 281 FIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGV-HIMVATPGRLMDMLDKKMVRLNVC 339
F+R T P+ + + GGV + ++++ HI+V TPGR++ + +K + L
Sbjct: 51 FVRFS--TYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNV 108
Query: 340 RYLCMDEADRMID-MGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVN 398
R+ +DE D+M++ + DV+ IF +Q ++FSAT+ K+I+ + + P+ +
Sbjct: 109 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 168
Query: 399 VGRAGAASL--TVRQDLEPAQPEARTVQLLHCLQKTP-PPTLIFAERKQDVDAVHEYLLL 455
V +L V+ ++ ++ E +T +L L +IF + +++ L+
Sbjct: 169 VDDEAKLTLHGLVQHYIKLSEME-KTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 227
Query: 456 KGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIE 515
++ IH G QEER ++F+ G K +LVATD+ +G+D + VINYDMP+ +
Sbjct: 228 CNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSAD 287
Query: 516 NYVHRI 521
Y+HR+
Sbjct: 288 TYLHRV 293
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 124 bits (300), Expect = 1e-28
Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 43/339 (12%)
Query: 175 DDPPPPIRTFQHMKFP--KGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGK 232
++ PP F +K P + I+ L+ G + TP+Q + +P + + +D++ A TGSGK
Sbjct: 11 EEAPP---RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGK 67
Query: 233 TLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPE 292
TL F LP I P + G+II P+REL+ Q H + R ++L +
Sbjct: 68 TLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA----RAVRL----D 117
Query: 293 IRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDK-KMVRLNVCRYLCMDEADRMI 351
C + ++ + ++G ++++ TPGRL DM+ + + + L +DEADR++
Sbjct: 118 FAKCREVE----ADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLL 173
Query: 352 DMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQ 411
DMGF++ V I S QR+T LFSAT + + + A++ L P
Sbjct: 174 DMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYL--------------- 218
Query: 412 DLEPAQPEARTVQLLHCLQKTPPPTLI-FAERKQDVD----AVHEYLLLKGVEAVAIHGG 466
+ + ++ QL+H L + L+ F VD + + LK + HG
Sbjct: 219 ---KCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGK 275
Query: 467 KDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHV 505
DQ+ R A+ +F VL+ TDVA++GLD I ++
Sbjct: 276 MDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 120 bits (288), Expect = 4e-27
Identities = 107/391 (27%), Positives = 176/391 (45%), Gaps = 58/391 (14%)
Query: 182 RTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
++F+ + P +L LE +G PT +Q +PA++ G D + ++TGSGKTL + LPI+
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 242 --MFCLEQEVKMPFIRNEGP---YGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSC 296
+ L ++ + N+ +I+ PSREL Q ++ KL G R
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVE------KLLGPVHRRMV 223
Query: 297 -LAIGGVAVSECMEVVQKG-VHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMG 354
+GG E ++K I+V TPGR+ ++ + + CR+L +DE D ++
Sbjct: 224 QQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFN 283
Query: 355 FEEDVRTIFSYF-----AG---------QRQTLLFSATMPKKIQNFARSALVRPVTVNVG 400
F ED+ I + AG RQT+L SAT+P + A+S PV V
Sbjct: 284 FREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQAN 343
Query: 401 R----------AGAASL------------TVRQDLEPA--------QPEARTVQLLHCLQ 430
+ A SL T Q L PA + + + L C+
Sbjct: 344 KVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVH 403
Query: 431 KTPPPTLI-FAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVA 489
++I F + + V L +G+ + +HG + RS ++ F+ GE VLV
Sbjct: 404 ALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVT 463
Query: 490 TDVASKGLDFANIQHVINYDMPEDIENYVHR 520
+++++GLD A V+N ++P D +Y HR
Sbjct: 464 NELSARGLDVAECDLVVNLELPTDAVHYAHR 494
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 112 bits (269), Expect = 8e-25
Identities = 94/364 (25%), Positives = 167/364 (45%), Gaps = 29/364 (7%)
Query: 182 RTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
+TF + + +++ L+ + +P IQ V++G+ I +GSGKTL + +P+I
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 242 MFCLEQEVKMPFIRNEG-PYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIG 300
E+E++ + G P +++ P+ ELA Q + R + +G P RS + G
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQ----VLANCRSISKSGVP-FRSMVVTG 488
Query: 301 GVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMI-DMGFEEDV 359
G +E +++GV +++ATPGR ++++ ++ L+ R +DE D + D FE +
Sbjct: 489 GFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAAL 548
Query: 360 RTIFSYFAGQRQTLLFSATMPKKIQN-----FARSALVR-PVTVNVGRAGAASLT--VRQ 411
+ + + Q L +AT+P +I N F +V P V A L
Sbjct: 549 QNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGD 608
Query: 412 DLEPAQPEA----RTVQLLHCLQKTP-PPTLIFAERKQDVDAVHEYLLL-----KGVEAV 461
D PE + LL +++ P T+IF + + V + + +
Sbjct: 609 DNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVL 668
Query: 462 AIHGGKDQEERSRAVEAFRRGEKD----VLVATDVASKGLDFANIQHVINYDMPEDIENY 517
H QE R ++ F + + LV TD AS+G+DF+ + HV+ +D P D Y
Sbjct: 669 PFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEY 728
Query: 518 VHRI 521
V R+
Sbjct: 729 VRRV 732
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 106 bits (254), Expect = 5e-23
Identities = 81/323 (25%), Positives = 151/323 (46%), Gaps = 22/323 (6%)
Query: 182 RTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
++F+ + ++R L KGI+KPT IQ +P +L G+D++ A TGSGKTL + LP++
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Query: 242 --MFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAI 299
+F + K + P I+ PSREL +Q + + I ++ ++++
Sbjct: 106 QKLFSADSVSK----KKLAPSAFILVPSRELCQQVYTEVSSLIELCRV----QLKAVQLT 157
Query: 300 GGVAVSECMEVVQKGVHIMVATPGRL-----MDMLDKKMVRLNVCRYLCMDEADRMIDMG 354
++ S+ + I+V+TP + +L+ V ++ L +DEAD ++ G
Sbjct: 158 SSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESL-SILVLDEADLLLSYG 216
Query: 355 FEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLE 414
+E+++R++ S + Q LL SAT ++ + L P+ + + V +++
Sbjct: 217 YEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQ 276
Query: 415 ------PAQPEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKD 468
AQ + + L L+ LIF + +L G+++ ++G
Sbjct: 277 QFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELP 336
Query: 469 QEERSRAVEAFRRGEKDVLVATD 491
Q R +E F G D L+ATD
Sbjct: 337 QNSRLHILEQFNAGLFDYLIATD 359
Score = 39.5 bits (88), Expect = 0.006
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 495 KGLDFANIQHVINYDMPEDIENYVHRI 521
+G+DF + VIN+DMP+ + Y+HRI
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRI 424
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 100 bits (239), Expect = 3e-21
Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 34/259 (13%)
Query: 198 EAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNE 257
E G + PT +Q Q +P +L+GRD++ A TG+GKT+ + P+I K+ R+
Sbjct: 46 ERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVD--RSH 103
Query: 258 GPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHI 317
G + L+I P+REL Q ++ ++ + I +GG ++ ++KG+ I
Sbjct: 104 GTFALVIVPTRELCLQVYETLEKLLHRFHW-----IVPGYVMGGEKKAKEKARLRKGISI 158
Query: 318 MVATPGRLMDMLDK--KMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAG------- 368
++ATPGRL+D L V N+ R++ DEAD ++++G+ +++ I
Sbjct: 159 LIATPGRLLDHLKNTASFVHKNL-RWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGE 217
Query: 369 ---------QRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDL---EPA 416
Q+Q LL SAT+ K+ + A+ +L PV + G + ++Q+L PA
Sbjct: 218 EDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMI-----GLDNTKLQQNLSIESPA 272
Query: 417 QPEARTVQLLHCLQKTPPP 435
P++ ++ + K+ P
Sbjct: 273 APDSDAEDMVIHVNKSANP 291
Score = 61.7 bits (143), Expect = 1e-09
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 463 IHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
+HG +QE+R A F+ ++ VL++TDVA++GLDF ++ +I YD P + YVHR+
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRV 437
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 97.5 bits (232), Expect = 2e-20
Identities = 94/358 (26%), Positives = 161/358 (44%), Gaps = 40/358 (11%)
Query: 190 PKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEV 249
P+ IL +E G PT IQ + +P + GRD I A TGSGKTL + L I Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 250 KMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSC----LAIGGVAVS 305
+ +I+ P+REL Q + R L +++ C L GG
Sbjct: 144 SV--------QAVIVVPTRELGMQ----VTKVARMLAAKSEIDVKGCTVMALLDGGTLRR 191
Query: 306 ECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFE-EDVRTIFS 364
+ + I+VAT L ML+K + R++ R L +DE D + + VR + +
Sbjct: 192 HKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLT 251
Query: 365 YFAG--QRQTLLFSATMPKKIQNFARSALVRP------VTVNVGRAGAASLTVRQDLEPA 416
F+ +RQT+ SA++P+ ++F + + V V+V L +
Sbjct: 252 SFSSCDKRQTVFASASIPQH-KHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMC 310
Query: 417 QPEARTVQLLHCLQK-TPPPTLIFAERKQD----------VDAVHEYL--LLKG-VEAVA 462
+ + LL L+ P +IF + + + E+L KG +E +
Sbjct: 311 EKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILL 370
Query: 463 IHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
+ G + R+ ++ R+G +LV+TD+A++G+D H+ N+D+P+ + +Y+HR
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHR 428
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 84.6 bits (200), Expect = 2e-16
Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 22/207 (10%)
Query: 172 VEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMP-AVLNGRDMIGIAFTGS 230
VE ++ PP + M+ +++ + ++PT IQ A G+D+IG A TGS
Sbjct: 180 VEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGS 239
Query: 231 GKTLVFTLPII------------MFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDII 278
GKTL F LPI+ ++ L+ E + + LII P+RELA Q + +
Sbjct: 240 GKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHL 299
Query: 279 QHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDML---DKKMVR 335
++ ++L + P +GG+ + +++ I+VATPGRL +++ +K +V
Sbjct: 300 ENAAKNLSVKVVP------IVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVE 353
Query: 336 LNVCRYLCMDEADRMIDMGFEEDVRTI 362
L+ + +DEADRM++ G ++++I
Sbjct: 354 LHSLSFFVLDEADRMVERGHFRELQSI 380
Score = 62.9 bits (146), Expect = 6e-10
Identities = 25/85 (29%), Positives = 48/85 (56%)
Query: 436 TLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASK 495
T++F D+ + L + G++ + Q R ++++ FR E +L+ATD+ ++
Sbjct: 505 TIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVAR 564
Query: 496 GLDFANIQHVINYDMPEDIENYVHR 520
G+D N++ +I+Y +P E YVHR
Sbjct: 565 GIDIKNVRTIIHYKLPHSAEVYVHR 589
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 64.9 bits (151), Expect = 2e-10
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 317 IMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEE-DVRTIFSYFAG--QRQTL 373
I+VAT L ML+K + R++ R L +DE D + + VR + + F+ +RQT+
Sbjct: 46 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTV 105
Query: 374 LFSATMPKKIQNFARSALVRPVT------VNVGRAGAASLTVRQDLEPAQPEARTVQLLH 427
SA++P+ ++F + + T V+V L + + + LL
Sbjct: 106 FASASIPQH-KHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLA 164
Query: 428 CLQKTPPPT-LIFAERKQD----------VDAVHEYLLL--KG-VEAVAIHGGKDQEERS 473
L+ P + +IF + + + E+L KG +E + + G + R+
Sbjct: 165 LLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRA 224
Query: 474 RAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
++ R+G +LV+TD+A++G+D H+ N+D+P+ + +Y+HR
Sbjct: 225 ASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHR 271
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 62.1 bits (144), Expect = 1e-09
Identities = 26/63 (41%), Positives = 43/63 (68%)
Query: 458 VEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENY 517
++A GG +Q RS+ ++AFR+G+ VLVA+D ++G+D + +VINYDMP + +
Sbjct: 353 IKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTF 412
Query: 518 VHR 520
+HR
Sbjct: 413 IHR 415
Score = 59.7 bits (138), Expect = 6e-09
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 190 PKGILRGLEAKGIQKPTPIQVQGMPAVLNG----RDMIGIAFTGSGKTLVFTLPIIMFCL 245
PK + + LE GI P+QV + RD+ + TGSGKTL + LPI+
Sbjct: 30 PK-LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLA 88
Query: 246 EQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLT-GSPEIRSCLA------ 298
+ V+ +R L++ P+R+LA Q D+ + L+ GS +S +A
Sbjct: 89 SRPVRC--LR-----ALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQL 141
Query: 299 ------IGGVAVS--ECMEVVQKGVHIMVATPGRLMDMLDK-KMVRLNVCRYLCMDEADR 349
G+ + + ++ V I+VATPGRLMD ++ K L RYL +DE DR
Sbjct: 142 IKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDR 201
Query: 350 MIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAG 403
++ ++ + T+ LF + P F VR +V G G
Sbjct: 202 LLREAYQSWLPTVLQ-LTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKG 254
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 55.6 bits (128), Expect = 9e-08
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 436 TLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASK 495
T++FA + V+AV + L ++ H +ER+ + FR V V TD A++
Sbjct: 427 TMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAAR 485
Query: 496 GLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREA 555
G+D N+ HVI D +++HRI + RDLV +REA
Sbjct: 486 GVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEAN----RDLVEAIREA 541
Score = 54.0 bits (124), Expect = 3e-07
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 197 LEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII----MFCLEQEVKMP 252
L G +P+ Q +P++L+G+D+I A TGSGKT + PII L+ EV
Sbjct: 95 LRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTN- 153
Query: 253 FIRNEGPY-----GLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSEC 307
R E P+ LI+CP+ L +Q ++ + G+P +R G +
Sbjct: 154 --REERPFPLKNISLILCPNVMLCEQVVRMVNGLVDE---DGNPLLRVEAVCGSQGWPDR 208
Query: 308 MEVVQKGVHIMVATPGRLMDMLDKKMVR----LNVCRYLCMDEADRMIDMGFEEDVRTIF 363
+ I+V+TP L++ ++ K R L +Y+ DEAD ++ F+ + +
Sbjct: 209 LP------DIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLI 262
Query: 364 SYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVN 398
+ L F K++ A+S L RP+ ++
Sbjct: 263 N-------MLRFD---EKQVSRLAKSNLGRPMEID 287
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 48.8 bits (111), Expect = 1e-05
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 437 LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKG 496
+++ + + + D + +YL + A H G ++R R E+F + V+VAT G
Sbjct: 490 IVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMG 549
Query: 497 LDFANIQHVINYDMPEDIENYVHRI 521
LD ++ VI++ +P +E YV I
Sbjct: 550 LDKGDVGAVIHFSVPGSMEEYVQEI 574
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 44.4 bits (100), Expect = 2e-04
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 318 MVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLL--- 374
+VATP RL++++ K V ++ L +DE + G+ V++I + + QT++
Sbjct: 250 IVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNN 309
Query: 375 -FSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTVQLLHCLQKTP 433
FSA++ +Q+F ++ R VTVN A S + A E + + L +
Sbjct: 310 SFSASIIPAVQSFLGGSVNR-VTVNESVASQGSCITQTVSVCASEEKKLQKFAKHLDSSS 368
Query: 434 PPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQE-ERSR 474
+ +++ + L LKG+ K E ++SR
Sbjct: 369 SKLIYIVTKEESFKKIMAILKLKGISVSTSSDSKLSEVKKSR 410
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 42.7 bits (96), Expect = 7e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRR-- 481
+LL L+ LIF++ + +D + +YL+ +G + I G +ER ++EA+ +
Sbjct: 502 KLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPG 561
Query: 482 GEKDV-LVATDVASKGLDFANIQHVINYD 509
EK V L++T G++ A VI YD
Sbjct: 562 SEKFVFLLSTRAGGLGINLATADVVILYD 590
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 42.7 bits (96), Expect = 7e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRR-- 481
+LL L+ LIF++ + +D + +YL+ +G + I G +ER ++EA+ +
Sbjct: 502 KLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPG 561
Query: 482 GEKDV-LVATDVASKGLDFANIQHVINYD 509
EK V L++T G++ A VI YD
Sbjct: 562 SEKFVFLLSTRAGGLGINLATADVVILYD 590
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 42.7 bits (96), Expect = 7e-04
Identities = 18/81 (22%), Positives = 45/81 (55%)
Query: 437 LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKG 496
+I+ + D + +L G+ + A H G + + RS ++ + +K ++VAT G
Sbjct: 167 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 226
Query: 497 LDFANIQHVINYDMPEDIENY 517
+D +++ V ++++P+ +E++
Sbjct: 227 IDKKDVRMVCHFNIPKSMESF 247
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 42.7 bits (96), Expect = 7e-04
Identities = 18/81 (22%), Positives = 45/81 (55%)
Query: 437 LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKG 496
+I+ + D + +L G+ + A H G + + RS ++ + +K ++VAT G
Sbjct: 260 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 319
Query: 497 LDFANIQHVINYDMPEDIENY 517
+D +++ V ++++P+ +E++
Sbjct: 320 IDKKDVRMVCHFNIPKSMESF 340
Score = 29.9 bits (64), Expect = 5.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 209 QVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
Q++ + AV++GRD + TG GK++ + +P +
Sbjct: 41 QLEAIQAVVSGRDCFCLMPTGGGKSICYQIPAL 73
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 42.7 bits (96), Expect = 7e-04
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 437 LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKG 496
+I+ + D + V E L G +A HG + E+R+ + + E +++ AT G
Sbjct: 677 IIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMG 736
Query: 497 LDFANIQHVINYDMPEDIENY 517
++ +++ VI++ +P+ IE Y
Sbjct: 737 INKPDVRFVIHHSLPKSIEGY 757
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 42.3 bits (95), Expect = 0.001
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 437 LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGE--KDVLVATDVAS 494
++FA + +D + E++ KG+ V I G +R AV++F+ K ++ +
Sbjct: 558 VVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGVEAGG 617
Query: 495 KGLDFANIQHVINYDMPE 512
GLDF+ Q+V+ ++P+
Sbjct: 618 VGLDFSAAQNVVFLELPK 635
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 41.5 bits (93), Expect = 0.002
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRR-- 481
+LL L++ LIF++ + +D + +YL+ +G I G +ER ++EA+ +
Sbjct: 497 KLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPG 556
Query: 482 GEKDV-LVATDVASKGLDFANIQHVINYD 509
EK V L++T G++ A VI YD
Sbjct: 557 SEKFVFLLSTRAGGLGINLATADVVILYD 585
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 39.5 bits (88), Expect = 0.006
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGE 483
+LL L++T LIF++ + +D + EYL L+G + + G E R +A++ F
Sbjct: 944 KLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPA 1003
Query: 484 KD---VLVATDVASKGLDFANIQHVINYDMPEDIEN 516
D L++T G++ A V+ +D + +N
Sbjct: 1004 SDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQN 1039
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 37.9 bits (84), Expect = 0.020
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 436 TLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASK 495
T+I+ +++ + +YL G++A A + ++ + + F + V+VAT
Sbjct: 500 TIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGM 559
Query: 496 GLDFANIQHVINYDMPEDIENY 517
G+D N++ +I+Y + +E Y
Sbjct: 560 GIDKKNVRKIIHYGWLQSLEAY 581
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 37.5 bits (83), Expect = 0.026
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 465 GGKDQEERSRA--VEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYV 518
G K RS ++ F+ E ++LVAT V +GLD VI YD+PE + +++
Sbjct: 551 GLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFI 606
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 37.5 bits (83), Expect = 0.026
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 469 QEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYV 518
+++++ VE FRRG +++VAT + +GLD + VI +D +I +++
Sbjct: 432 RKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFI 481
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 35.9 bits (79), Expect = 0.080
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 466 GKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYD 509
G+ Q+ + +E FR G +V+VAT + +GLD + VI +D
Sbjct: 510 GQSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFD 553
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 34.3 bits (75), Expect = 0.24
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 458 VEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPE 512
++ HG + ++ +E F +G+ +L+ T++ GLD N +I D+ +
Sbjct: 507 IDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQ 561
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 34.3 bits (75), Expect = 0.24
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGE 483
++L LQ+T L+F+ + +D + EYL + + I G E+R A+ F +
Sbjct: 1315 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPD 1374
Query: 484 KD---VLVATDVASKGLDFANIQHVINYDMPEDIEN 516
D L++ A +GL+ V+ YD + +N
Sbjct: 1375 TDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKN 1410
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 34.3 bits (75), Expect = 0.24
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGE 483
++L LQ+T L+F+ + +D + EYL + + I G E+R A+ F +
Sbjct: 1314 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPD 1373
Query: 484 KD---VLVATDVASKGLDFANIQHVINYDMPEDIEN 516
D L++ A +GL+ V+ YD + +N
Sbjct: 1374 TDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKN 1409
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 34.3 bits (75), Expect = 0.24
Identities = 15/65 (23%), Positives = 35/65 (53%)
Query: 456 KGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIE 515
+G+ + ++ + RS ++ F+ + VLV ++ + GL+ A +++ ++P D
Sbjct: 638 RGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAV 697
Query: 516 NYVHR 520
+Y HR
Sbjct: 698 HYAHR 702
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 34.3 bits (75), Expect = 0.24
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 476 VEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYV 518
+ FR G +LVAT VA +GLD V+ +D+ + + Y+
Sbjct: 716 ISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYI 758
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 33.5 bits (73), Expect = 0.43
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 437 LIFAERKQDVDAVHEYLLLK-GVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASK 495
+++ K + V ++L K V+ V H G ++R ++ GE ++ AT
Sbjct: 431 IVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGM 490
Query: 496 GLDFANIQHVINYDMPEDIENY 517
G+D A+++ VI+ + + +E+Y
Sbjct: 491 GIDKADVRFVIHNTLSKAVESY 512
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 32.3 bits (70), Expect = 0.98
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 201 GIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIM 242
GI K Q + + A++ GRD++ I G GK+L + LP ++
Sbjct: 86 GISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAML 127
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 31.9 bits (69), Expect = 1.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 463 IHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLD 498
+HG +++ A+ FR GE +L++T V G+D
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVD 837
>At3g14180.1 68416.m01792 expressed protein similar to
6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
GI:18149189
Length = 443
Score = 31.5 bits (68), Expect = 1.7
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 1 MSDVKDDPAPPPPI-KRYRREEKSDSDED 28
MSD D PPPP+ KR + EEK D D
Sbjct: 316 MSDDSGDSLPPPPLSKRMKTEEKKKQDGD 344
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 31.5 bits (68), Expect = 1.7
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 3 DVKDDPAPPPPIKRYRREEKSDSDEDVDNYEPYVPIKEXXXXXXXXXXXXXXXTAEAAAD 62
DV P PPP KR + EE + DE+V P P A
Sbjct: 86 DVAMGPPPPPSSKRTQEEE--EEDEEVMMGPPPPPKGLGNINDSDDEGDMIGPPPPPPAA 143
Query: 63 TKSSSENDHDDETSQEEWGRRYNVSLLDQ 91
S ++D DD+ EE RY + L ++
Sbjct: 144 RDSDEDSDDDDDNDNEE--NRYQIPLSNE 170
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 436 TLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRR--GEKDVLVATDVA 493
T+IF++ +D V +L G+E + G R RAV+ F + K +L++
Sbjct: 895 TIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAG 954
Query: 494 SKGLDFANIQHVINYDM 510
+ GL+ HVI D+
Sbjct: 955 NLGLNMVAACHVILLDL 971
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 30.7 bits (66), Expect = 3.0
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 437 LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVL--VATDVAS 494
LIF + + +D + ++ L G + + G EER ++ F K L ++T
Sbjct: 1095 LIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRSGG 1154
Query: 495 KGLDFANIQHVINYD------MPEDIENYVHRI 521
G++ VI YD M + ++ HRI
Sbjct: 1155 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRI 1187
>At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondrial,
putative similar to mitochondrial RNA helicase
[Arabidopsis thaliana] GI:5823579; contains Pfam profile
PF00271: Helicase conserved C-terminal domain
Length = 776
Score = 30.3 bits (65), Expect = 4.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 463 IHGGKDQEERSRAVEAF--RRGEKDVLVATDVASKGLDFANIQHVINYDM 510
I+G E R + + F + E DVLVA+D GL+ NI+ V+ Y +
Sbjct: 467 IYGALPPETRRQQAKLFNDQENEYDVLVASDAVGMGLNL-NIRRVVFYSL 515
>At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SDR)
family protein contains Pfam profile
PF00106:oxidoreductase, short chain
dehydrogenase/reductase family
Length = 298
Score = 29.9 bits (64), Expect = 5.2
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 438 IFAERKQDVDAVHEYLLLKGVEAVAIHGG-KDQEERSRAVEA-FRR-GEKDVLV 488
I RKQ +D L G++A+ + G + QE+ R VEA F+ G+ D+LV
Sbjct: 41 IMGRRKQVLDDAVSALRSLGIQAIGLEGDVRKQEDARRVVEATFQHFGKLDILV 94
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 29.5 bits (63), Expect = 6.9
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 15 KRYRREEKSDSDEDVDNY-EPYVPIKEXXXXXXXXXXXXXXXTAEAAADTKSSSENDHDD 73
KR R K DED D++ + +P ++ T + +D SS E+D++
Sbjct: 291 KRRVRNTKKGVDEDDDDFVDDCLPARKKAKTKSSRPRPRRRCTVPSDSDVASSGESDYEY 350
Query: 74 ETSQEE 79
S+EE
Sbjct: 351 TISEEE 356
>At2g15550.1 68415.m01781 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 589
Score = 29.5 bits (63), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 580 CSYCAGLGHRITECPKLEAVQ 600
CSYC + H + +CP L+A Q
Sbjct: 209 CSYCRRICHELEQCPLLDAEQ 229
>At3g59870.1 68416.m06681 expressed protein hypothetical protein
F6E13.7 - Arabidopsis thaliana, PIR:T00674
Length = 288
Score = 29.1 bits (62), Expect = 9.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 400 GRAGAASLTVRQDLEPAQPEARTVQLLHCLQKTPPPTLIFAERKQDV 446
G AG + +R L +PE TV L L+K PP + + Q+V
Sbjct: 182 GAAGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQNV 228
>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
domain
Length = 1113
Score = 29.1 bits (62), Expect = 9.2
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 221 DMIGIAFTGSGKTLVFTLPII-MFCLEQEVKMPFIRNEGPYGLI-ICPSRELAKQ-THDI 277
+MI A TGSGKT++F L I+ +F + F+ +G + I PS+ L ++ D
Sbjct: 42 NMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDW 101
Query: 278 IQHF----IRHLKLTGSPEIRS 295
Q F I L+LTG E S
Sbjct: 102 NQKFNSWGISCLELTGDNETYS 123
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 29.1 bits (62), Expect = 9.2
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRR 481
++L L+ T L F+ + +D + +YL LKG + + + G +R ++ F +
Sbjct: 1080 RMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNK 1137
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 29.1 bits (62), Expect = 9.2
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRR 481
++L L+ T L F+ + +D + +YL LKG + + + G +R ++ F +
Sbjct: 1080 RMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNK 1137
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.137 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,220
Number of Sequences: 28952
Number of extensions: 568861
Number of successful extensions: 2070
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1731
Number of HSP's gapped (non-prelim): 138
length of query: 620
length of database: 12,070,560
effective HSP length: 85
effective length of query: 535
effective length of database: 9,609,640
effective search space: 5141157400
effective search space used: 5141157400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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