GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001799-TA|BGIBMGA001799-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal
         (620 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   253   3e-69
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   6.2  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    23   8.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  253 bits (619), Expect = 3e-69
 Identities = 146/406 (35%), Positives = 223/406 (54%), Gaps = 15/406 (3%)

Query: 166 NKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGI 225
           +++ + V G+D PPPI +F+       +L  ++  G  KPT IQ   +P +L+GRD++  
Sbjct: 142 DEIEVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSC 201

Query: 226 AFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNE--GPYGLIICPSRELAKQTHDIIQHFIR 283
           A TGSGKT  F LPII   L  +   P   N    P  +I+ P+RELA Q  D      +
Sbjct: 202 AQTGSGKTAAFMLPIIHNLLSDK-NPPNTENNCAQPVVVIMSPTRELAIQIAD------Q 254

Query: 284 HLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLC 343
             K   +  ++  +  GG + +     +  G HI+VATPGRL D +++  V  N  +Y  
Sbjct: 255 GKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFV 314

Query: 344 MDEADRMIDMGFEEDVRTIFSYFA----GQRQTLLFSATMPKKIQNFARSALVRPVTVNV 399
           +DEADRM+DMGF  DV  + S+ +    G+RQTL+FSAT P+++Q  A   L+  + + V
Sbjct: 315 LDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAV 374

Query: 400 GRAGAASLTVRQDLEPAQPEARTVQLLHCLQKTPPP-TLIFAERKQDVDAVHEYLLLKGV 458
           G  G+A   V Q         +  +L+  L+K P   TLIF E K++ D +  +L  + +
Sbjct: 375 GIVGSACTDVEQKFFQVSKFDKRSKLVSILEKAPNERTLIFVETKRNADFLATFLSEQNI 434

Query: 459 EAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYV 518
           ++ +IHG + Q ER +A+  F+ G + VLVAT VA++GLD  ++QHVINYD+P+ I+ YV
Sbjct: 435 QSTSIHGDRYQSEREKALLDFKTGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYV 494

Query: 519 HRI-XXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFL 563
           HRI                    D ++  DL  +L +A Q +P +L
Sbjct: 495 HRIGRTGRVGNKGKATSFFDEDQDRNLASDLAKILSQAKQEIPEWL 540


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
          transcription factor protein.
          Length = 193

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/61 (19%), Positives = 21/61 (34%)

Query: 11 PPPIKRYRREEKSDSDEDVDNYEPYVPIKEXXXXXXXXXXXXXXXTAEAAADTKSSSEND 70
          PPP   Y  E     +E  D   PY+ ++                    ++D ++S +  
Sbjct: 21 PPPFGYYHEEPPLFYEERPDFVAPYIKVEADEEAPVLKSRSFGRKRKSISSDEENSFQGK 80

Query: 71 H 71
          H
Sbjct: 81 H 81


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 590 ITECPKLEAVQNKQASNI 607
           +T C K   VQ KQA  I
Sbjct: 82  VTNCSKCSEVQKKQAGKI 99


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,825
Number of Sequences: 317
Number of extensions: 5188
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 620
length of database: 114,650
effective HSP length: 61
effective length of query: 559
effective length of database: 95,313
effective search space: 53279967
effective search space used: 53279967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)