Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001799-TA|BGIBMGA001799-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 264 3e-71
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 261 2e-70
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 260 5e-70
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 254 2e-68
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 211 2e-55
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 200 5e-52
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 196 1e-50
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 179 1e-45
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 175 1e-44
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 173 8e-44
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 167 4e-42
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 157 3e-39
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 156 7e-39
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 155 2e-38
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 153 7e-38
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 152 1e-37
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 152 2e-37
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 146 8e-36
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 125 2e-29
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 121 3e-28
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 105 2e-23
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 104 4e-23
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 1e-10
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 47 9e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 47 9e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 42 3e-04
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 42 3e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 37 0.010
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 36 0.013
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 33 0.16
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 31 0.47
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 30 1.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 29 1.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 29 2.5
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 3.3
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 27 7.7
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 264 bits (646), Expect = 3e-71
Identities = 157/407 (38%), Positives = 216/407 (53%), Gaps = 14/407 (3%)
Query: 165 RNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIG 224
R + I+V G + P P+ TF+ FP +L+ ++ G + PTPIQ Q P ++GRDM+G
Sbjct: 105 RKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVG 164
Query: 225 IAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRH 284
I+ TGSGKTL + LP I+ Q + P +GP L++ P+RELA Q F +
Sbjct: 165 ISATGSGKTLSYCLPAIVHINAQPLLSP---GDGPIVLVLAPTRELAVQIQQECTKFGK- 220
Query: 285 LKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCM 344
S IR+ GGV + + +GV I +ATPGRL+DMLD L YL +
Sbjct: 221 -----SSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVL 275
Query: 345 DEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAG- 403
DEADRM+DMGFE +R I RQT++FSAT PK++Q AR L + V VG
Sbjct: 276 DEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDL 335
Query: 404 AASLTVRQDLE---PAQPEART-VQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVE 459
AAS ++Q +E A AR + L+ LIF K+ D + +L G
Sbjct: 336 AASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWP 395
Query: 460 AVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVH 519
A+AIHG K Q+ER + FR G+ ++VATDVAS+G+D I HV NYD P + E+YVH
Sbjct: 396 ALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455
Query: 520 RIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDM 566
RI + R+LV +L EA Q + L +M
Sbjct: 456 RIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEM 502
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 261 bits (639), Expect = 2e-70
Identities = 158/485 (32%), Positives = 247/485 (50%), Gaps = 19/485 (3%)
Query: 113 EEEHILESVAQSKALMGVAELAKG-IQYEEPIKTSWRPPRCILELPETRHEMIRNKLR-I 170
EEE++L A+ V + I YE+ K + P + L + +R L I
Sbjct: 347 EEENLLALAAKRSKKKDVITVDHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGI 406
Query: 171 LVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGS 230
+ G D P P+ ++ + + + G +KPT IQ Q +PA+ +GRD+IG+A TGS
Sbjct: 407 KIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGS 466
Query: 231 GKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGS 290
GKT+ F LP+ +Q P EGP +I+ P+RELA Q + F++ L
Sbjct: 467 GKTIAFLLPMFRHIKDQR---PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN---- 519
Query: 291 PEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDK---KMVRLNVCRYLCMDEA 347
IR+C A GG + + + +++G I+V TPGR++D+L ++ L+ C YL +DEA
Sbjct: 520 --IRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEA 577
Query: 348 DRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASL 407
DRM D+GFE V I + RQT+LFSAT P+ ++ AR L +PV + VG +
Sbjct: 578 DRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS 637
Query: 408 TVRQDLEPAQPEARTVQLLHCL-----QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVA 462
V Q +E E++ +LL L + TL+F +R++ DA+ L+ +G + +
Sbjct: 638 EVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNS 697
Query: 463 IHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIX 522
IHGGKDQ +R + ++ G DVL+AT V ++GLD ++Q V+NYD P +E+YVHR+
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 523 XXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDMLGEPDVPAPAGQGCSY 582
D+ L+ + Q VP L + + AG+ +
Sbjct: 758 RTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAA 817
Query: 583 CAGLG 587
G G
Sbjct: 818 GGGFG 822
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 260 bits (636), Expect = 5e-70
Identities = 153/426 (35%), Positives = 223/426 (52%), Gaps = 24/426 (5%)
Query: 180 PIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLP 239
P+ F +L+ ++ G +PTP+Q +P V +GRD++ A TGSGKT F P
Sbjct: 167 PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFP 226
Query: 240 IIMFCLEQ-EVKMPFIRNEG---------PYGLIICPSRELAKQTHDIIQHFIRHLKLTG 289
I+ ++ +P ++ G P LI+ P+REL Q H+ + F
Sbjct: 227 ILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYR----- 281
Query: 290 SPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADR 349
+R C GG + + + +G ++ ATPGRL+D++D+ + L ++L +DEADR
Sbjct: 282 -SWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADR 340
Query: 350 MIDMGFEEDVRTIFS----YFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAA 405
M+DMGFE +R I +RQTL+FSAT P+ IQ AR L V ++VGR G+
Sbjct: 341 MLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGST 400
Query: 406 SLTVRQDLEPAQPEARTVQLLHCLQKTPPP--TLIFAERKQDVDAVHEYLLLKGVEAVAI 463
S + Q + + + LL L PP TLIF E K+ D + +YLL A +I
Sbjct: 401 SENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSI 460
Query: 464 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXX 523
HG + Q ER RA+E FR G ++VAT VAS+GLD N+ HVINYD+P DI++YVHRI
Sbjct: 461 HGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGR 520
Query: 524 XXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDMLGEPDVPAPAGQGCSYC 583
+ + ++L+ LL+EA Q P FL+ M E G+G Y
Sbjct: 521 TGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMARESSF-GGNGRGGRY- 578
Query: 584 AGLGHR 589
+G G R
Sbjct: 579 SGRGGR 584
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 254 bits (623), Expect = 2e-68
Identities = 148/421 (35%), Positives = 227/421 (53%), Gaps = 29/421 (6%)
Query: 163 MIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDM 222
+++ I ++GDD P P+R ++ P +L+ L+ ++P+ IQ +P +L +D+
Sbjct: 230 ILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDL 289
Query: 223 IGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFI 282
IGIA TGSGKT F +P+I+ + + GPY +++ P+RELA+Q IQ +
Sbjct: 290 IGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQ----IQ--V 343
Query: 283 RHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYL 342
K R +GG A E + +G HI+VATPGRL+D L++++ L+ C Y+
Sbjct: 344 EGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYV 403
Query: 343 CMDEADRMIDMGFEEDVRTIFSYF-------------------AGQRQTLLFSATMPKKI 383
MDEADRM+DMGFE+DV I S + +RQT++FSAT+P ++
Sbjct: 404 VMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRV 463
Query: 384 QNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEA---RTVQLLHCLQKTPPPTLIFA 440
N A+S L+ PV + +G G A V Q +E ++ R V+ + + PP +IF
Sbjct: 464 ANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFV 523
Query: 441 ERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFA 500
K++++A+ + L G AV +HG K QE+R RA+E R D+LVATD+A +G+D
Sbjct: 524 NLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIP 583
Query: 501 NIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDL-VHLLREAGQRV 559
N+ V+NY+M + IE+Y HRI D V DL V L R A +
Sbjct: 584 NVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHI 643
Query: 560 P 560
P
Sbjct: 644 P 644
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 211 bits (516), Expect = 2e-55
Identities = 137/398 (34%), Positives = 200/398 (50%), Gaps = 20/398 (5%)
Query: 158 ETRHEMIRNKLRILVEGDDPPPPIRT----FQHMKFPKGILRGLEAKGIQKPTPIQVQGM 213
E E I K EGD + T FQ M + IL+GL G + PT IQ + +
Sbjct: 231 EEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
Query: 214 PAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQ 273
P L G+D++G A TGSGKT F +PI+ L + K+P R LI+CP+RELA Q
Sbjct: 291 PLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRV-----LILCPTRELAMQ 345
Query: 274 THDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMD-MLDKK 332
H + K+ +I CL IGG+++ + ++K I++ATPGR +D M + +
Sbjct: 346 CHSVAT------KIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQ 399
Query: 333 MVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALV 392
+ + MDEADRM++ GF +++ I RQT+LFSATM K+ + R +L
Sbjct: 400 GFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLN 459
Query: 393 RPVTVNVGRAGAASLTVRQDLEPAQPEA---RTVQLLH-CLQKTPPPTLIFAERKQDVDA 448
RPV V V + + Q+ +P+ R L++ C + T+IF K
Sbjct: 460 RPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHK 519
Query: 449 VHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINY 508
+ L + A IHG QE+R RA+E FR G+ + L+ATDVAS+G+D I+ VINY
Sbjct: 520 MRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINY 579
Query: 509 DMPEDIENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLR 546
+ P E Y+HR+ D VL+
Sbjct: 580 EAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLK 617
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 200 bits (488), Expect = 5e-52
Identities = 137/396 (34%), Positives = 203/396 (51%), Gaps = 32/396 (8%)
Query: 180 PIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLP 239
PI F + + GL K ++PTPIQ P +L GRD++GIA TGSGKT+ F +P
Sbjct: 165 PILQFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 240 IIMFC--LEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCL 297
+ + L +P + L++ P+RELA QT++ + I+ L ++ +
Sbjct: 223 ALQYLNGLSDNKSVPRV-------LVVSPTRELAIQTYENLNSLIQGTNL------KAVV 269
Query: 298 AIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEE 357
GG SE K +++ TPGRL+D+++ + + YL +DEADRM+D GFE+
Sbjct: 270 VYGGAPKSEQARAA-KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQ 328
Query: 358 DVRTIFSYFA-----GQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAG-AASLTVRQ 411
D+R I S+ G RQT+ FSAT P+ ++ A + L PV + +G AAS + Q
Sbjct: 329 DIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQ 388
Query: 412 DLEPAQ-PEARTVQLLHCLQK------TPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIH 464
+E P ++ L + L+K LIF K++ V E L + V IH
Sbjct: 389 IVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARV-EGTLARKYNVVGIH 447
Query: 465 GGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXX 524
G Q R +A+ F+ G+ VLVATDVA++GLD +Q VIN P IE+YVHRI
Sbjct: 448 GDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRT 507
Query: 525 XXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVP 560
D S +LV++LR+A Q +P
Sbjct: 508 GRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIP 543
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 196 bits (477), Expect = 1e-50
Identities = 122/343 (35%), Positives = 184/343 (53%), Gaps = 18/343 (5%)
Query: 182 RTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
+TF+ + + E G + PTPIQ + +P VLN RD+IG+A TGSGKT F LP+I
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 242 MFCLEQEVKMPFIRNEGPY-GLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIG 300
QE+ N P+ +++ P+RELA Q + + + GS +RS + +G
Sbjct: 106 -----QELW----NNPSPFFAVVLAPTRELAYQISEQFE------AIGGSIGVRSVVIVG 150
Query: 301 GVAVSECMEVVQKGVHIMVATPGRLMDMLDK-KMVRLNVCRYLCMDEADRMIDMGFEEDV 359
G+ + + K H++V TPGRLMD L+ K L +YL MDEADR++DM F +
Sbjct: 151 GMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPII 210
Query: 360 RTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPE 419
I +R+TLLFSATM K++ R++L +PV V V + T+ Q +
Sbjct: 211 DKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFK 270
Query: 420 ARTVQLLHCLQKTPPPTLI-FAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
+ L++ + + ++I FA D + L G A+ +HG Q R A+
Sbjct: 271 HKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNK 330
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
F+ G + LVATDVA++GLD + VINYD+P D + Y+HR+
Sbjct: 331 FKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRV 373
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 179 bits (435), Expect = 1e-45
Identities = 110/389 (28%), Positives = 192/389 (49%), Gaps = 16/389 (4%)
Query: 181 IRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPI 240
I TF M +LRG+ A G ++P+ IQ + + +L RD++ A +G+GKT F++ +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 241 IMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIG 300
+ Q++ + + LI+ P+RELA+Q IQ + L + E +C IG
Sbjct: 78 L-----QKIDTSLKQCQA---LILAPTRELAQQ----IQKVVVALGDLMNVECHAC--IG 123
Query: 301 GVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVR 360
G V + M +Q GVH++V TPGR+ DM+ ++ + + + +DEAD M+ GF++ +
Sbjct: 124 GTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIY 183
Query: 361 TIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEA 420
IF Q +L SATMP+ + + P+ + V + ++Q + E
Sbjct: 184 DIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEE 243
Query: 421 RTVQLLHCLQKTPPPT--LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
+ L L +T T +IF ++ VD + E L + ++HG DQ +R +
Sbjct: 244 WKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHE 303
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXX 538
FR G +L+ TD+ ++G+D + VINYD+P + ENY+HRI
Sbjct: 304 FRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVT 363
Query: 539 XPDHSVLRDLVHLLREAGQRVPGFLLDML 567
D ++R++ + +P + D++
Sbjct: 364 NDDVRMMREIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 175 bits (427), Expect = 1e-44
Identities = 108/389 (27%), Positives = 192/389 (49%), Gaps = 16/389 (4%)
Query: 181 IRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPI 240
+ +F+ M + +LRG+ A G + P+ +Q + + + GRD+I A +G+GKT F++ I
Sbjct: 20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI 79
Query: 241 IMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIG 300
+ Q + + +R+ LI+ P+RELA Q +++ H+ + + +C IG
Sbjct: 80 L-----QSIDLS-VRDT--QALILSPTRELAVQIQNVVLALGDHMNV----QCHAC--IG 125
Query: 301 GVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVR 360
G +V ++ + G H++ TPGR+ DM+ ++ +R + L +DEAD +++ GF+E +
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIY 185
Query: 361 TIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEA 420
I+ Y Q ++ SAT+P+ + PV + V R ++Q + E
Sbjct: 186 DIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEE 245
Query: 421 RTVQLLHCLQKTPPPT--LIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
L L T T +IF ++ VD + E + ++HG Q+ER ++
Sbjct: 246 WKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQD 305
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXX 538
FR+G VL+ TD+ ++G+D + VINYD+P + ENY+HRI
Sbjct: 306 FRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVT 365
Query: 539 XPDHSVLRDLVHLLREAGQRVPGFLLDML 567
D +LRD+ +P + DM+
Sbjct: 366 NEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 173 bits (420), Expect = 8e-44
Identities = 113/348 (32%), Positives = 184/348 (52%), Gaps = 18/348 (5%)
Query: 181 IRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPI 240
I F ++ + I + ++ G + T IQ + +P +L GRD++G A TGSGKTL F +P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 241 IMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIG 300
I E + F G +II P+RELA Q + + +++ T + IG
Sbjct: 148 I----EMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFG------IVIG 197
Query: 301 GVAVSECMEVVQKGVHIMVATPGRLMDMLD--KKMVRLNVCRYLCMDEADRMIDMGFEED 358
G + + KGV+++VATPGRL+D L K V N+ R L +DEADR++++GFE++
Sbjct: 198 GANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNL-RSLVIDEADRILEIGFEDE 256
Query: 359 VRTIFSYFAGQ-RQTLLFSATMPKKIQNFARSALVR-PVTVNV--GRAGAASLTVRQDLE 414
+R I + RQTLLFSAT K+++ AR +L P+ VNV G+ + + Q
Sbjct: 257 MRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYV 316
Query: 415 PAQPEARTVQLLHCLQKT-PPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERS 473
+ R + L L++ ++F V + E L + + +HG + Q+ R+
Sbjct: 317 VVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRT 376
Query: 474 RAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
F EK +L+ T+VA++GLD + ++ YD P+D +Y+HR+
Sbjct: 377 NTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRV 424
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 167 bits (406), Expect = 4e-42
Identities = 118/414 (28%), Positives = 195/414 (47%), Gaps = 40/414 (9%)
Query: 181 IRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPI 240
+ + H +L L G KP PIQ +P G D+IG A TGSGKTL F +PI
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 241 IMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIG 300
+ CL + V +++ L++ P+RELA H I QHF + SP IR G
Sbjct: 181 LEHCL-RNVDAKYVQ-----ALVVAPTRELA---HQICQHF---ELIKPSPNIRVMSITG 228
Query: 301 GVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLC--MDEADRMIDMGFEED 358
G+AV + ++ K H++VATPGRL ++++ + N + C +DEADR++ E+
Sbjct: 229 GLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEE 288
Query: 359 VRTIFSYFAG----QRQTLLFSATMPKKIQNFARSALV---------------------- 392
+ + QRQT +FSAT + +Q + +
Sbjct: 289 LSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFG 348
Query: 393 RPVTVNVGRAGAASLTVRQDLEPAQPEARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEY 452
+P ++ A + V + L P + + L + + + P T++FA +D+ + +
Sbjct: 349 KPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPF 408
Query: 453 LLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPE 512
L V + +H DQ++R +++E F+ K VLV TDVA++G+D ++ HVI+Y +P
Sbjct: 409 LNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPH 468
Query: 513 DIENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLLDM 566
+ YVHR + S L+ L + L++ + F +DM
Sbjct: 469 TADMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKIETFINFPVDM 522
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 157 bits (382), Expect = 3e-39
Identities = 112/354 (31%), Positives = 179/354 (50%), Gaps = 28/354 (7%)
Query: 182 RTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
++F + ++ L+A I +PT IQ + +L GR+ IG A TGSGKT F LPII
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 242 MFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGG 301
E+ K P G + LI+ P+RELA Q + + L + ++ L +GG
Sbjct: 67 ----EKWSKDP----SGIFALILTPTRELAIQIDE------QFAALGANLNLKHALIVGG 112
Query: 302 VAVSECMEVVQKGVHIMVATPGRLMDML----DKKMVRLNVCRYLCMDEADRMIDMGFEE 357
+ + + K H++VATPGRL D++ ++ + L ++L MDEADR++ F +
Sbjct: 113 MDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFAD 172
Query: 358 DVRTIFSYF--AGQRQTLLFSATMPKKIQNFARSALVR---PVTVNVGRAGAASL--TVR 410
D+ FS + RQTLLF+AT+ I+ P+ + S+ T++
Sbjct: 173 DLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQ 232
Query: 411 QDLEPAQPEARTVQLLHCL---QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGK 467
Q + R L+H L + +IF R + + ++ L L + +H
Sbjct: 233 QSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEM 292
Query: 468 DQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
Q ER ++ FR +LVATDVAS+GLD ++Q VIN+D+P D ++Y+HR+
Sbjct: 293 VQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRV 346
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 156 bits (379), Expect = 7e-39
Identities = 105/322 (32%), Positives = 165/322 (51%), Gaps = 17/322 (5%)
Query: 206 TPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIIC 265
T IQ Q +P+ L GRD++G A TGSGKTL F +P+I E + + +G L+I
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLI----ENLYRKKWTSLDGLGALVIS 118
Query: 266 PSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRL 325
P+RELA QT + + +K+ + L IGG E E + + ++I+V TPGRL
Sbjct: 119 PTRELAIQTFETL------VKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRL 171
Query: 326 MDMLDKKM-VRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQ 384
+ +D+ + + + L +DEADR++DMGF + I S RQT+LFSAT K ++
Sbjct: 172 LQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVK 231
Query: 385 NFARSALVRPVTVNVGRAGAASLTVR-QDLEPAQPEARTVQLLHCLQKTPPP--TLIFAE 441
+ AR +L P ++V +S P + +L +T T++F
Sbjct: 232 DLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKTIVFLS 291
Query: 442 RKQDVDAVHEYL--LLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDF 499
+ V V+E + G+ + +HG + Q R+ F VL TD+ ++GLDF
Sbjct: 292 SCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDF 351
Query: 500 ANIQHVINYDMPEDIENYVHRI 521
+ VI D PED++ Y+HR+
Sbjct: 352 PAVDWVIQLDAPEDVDTYIHRV 373
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 155 bits (375), Expect = 2e-38
Identities = 111/398 (27%), Positives = 193/398 (48%), Gaps = 23/398 (5%)
Query: 172 VEGDDPPPPIRTFQHMKFPKGIL-RGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGS 230
V G++P PI +FP+GIL L+ + I + T IQ +P + + RD++ A TGS
Sbjct: 40 VTGNNPVDPIE-----EFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGS 94
Query: 231 GKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGS 290
GKT+ + PI+ + ++ +P G +I+ P+REL +Q I L S
Sbjct: 95 GKTIAYLFPILQ---KLQLHVP----GGYRAIIVAPTRELCEQ----IYRQAEKLSFGTS 143
Query: 291 PEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRM 350
+I L+ + E +++ + + TP RL+ + + V + MDEADR+
Sbjct: 144 LKIIE-LSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGLSFEKV-EFFVMDEADRL 201
Query: 351 IDMGFEEDVRTIFSYFAGQRQTL-LFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTV 409
+ GF E I S LFSAT+P +++ A+ V P+ + VG AA+ ++
Sbjct: 202 FEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSI 261
Query: 410 RQDLEPAQPEARTVQLLHCL---QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGG 466
Q L + + +L + + P +IF + + A++ LL + IHG
Sbjct: 262 DQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGE 321
Query: 467 KDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIXXXXX 526
Q +R A+ FR+GE VL+ATD+ ++G+DF ++ VIN+D P+ + +Y+HRI
Sbjct: 322 LPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGR 381
Query: 527 XXXXXXXXXXXXXPDHSVLRDLVHLLREAGQRVPGFLL 564
D ++ + ++R +G VP +++
Sbjct: 382 AGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVM 419
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 153 bits (371), Expect = 7e-38
Identities = 109/354 (30%), Positives = 179/354 (50%), Gaps = 25/354 (7%)
Query: 183 TFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIM 242
+FQ + K + + A+G +K TP+Q +P L +D++ A TGSGKTL + LP
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP--- 58
Query: 243 FCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHL--KLTGSPEIRSCLAIG 300
C ++ + G LI+ P+RELA Q ++ + + + L G ++ + + IG
Sbjct: 59 -CFDKVTRRD-TDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIG 116
Query: 301 --GVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEED 358
G ++ +K +++ TPGRL +ML + L +DEAD +IDMGF+
Sbjct: 117 GKGTLTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRT 174
Query: 359 VRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVR-----PVTV---NVGRAGAASLTVR 410
+++I S QR+T LFSATM + +F + A +R VTV + +SL ++
Sbjct: 175 LQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQ 234
Query: 411 QDLEPAQPEARTVQLLHCLQKTP-PPTLIFAERKQDVDAVHEYLLLKGV--EAVAIHGGK 467
+ P P + ++H L ++F V+ + L + E VA+HG +
Sbjct: 235 SLVIP--PIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQ 292
Query: 468 DQEERSRAVEAFRR-GEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHR 520
Q RSR E F++ +K VL TD+AS+GLD N+ V+ D P D +++ HR
Sbjct: 293 VQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHR 346
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 152 bits (369), Expect = 1e-37
Identities = 99/343 (28%), Positives = 168/343 (48%), Gaps = 24/343 (6%)
Query: 184 FQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMF 243
F+ + +L G+ G ++P+PIQ + +P L+GRD++ A G+GKT F +P +
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLE- 104
Query: 244 CLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVA 303
+ + K I+ LI+ P+RELA QT + + +H+ ++ + GG
Sbjct: 105 --KVDTKKSKIQT-----LILVPTRELALQTSQVCKTLGKHMN------VKVMVTTGGTT 151
Query: 304 VSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIF 363
+ + + + VHI+V TPGR++D+ K + + C MDEAD+++ F + +
Sbjct: 152 LRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLL 211
Query: 364 SYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTV 423
SYF RQ L+SAT P ++NF L +P +N+ LT+R +
Sbjct: 212 SYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINL----MDELTLR-GVTQYYAFVDES 266
Query: 424 QLLHCL-----QKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
Q +HCL + ++IF V+ + + + G H Q R+R
Sbjct: 267 QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHN 326
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
FR G LV +D+ ++G+D + VIN+D P++ E Y+HRI
Sbjct: 327 FRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 369
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 152 bits (368), Expect = 2e-37
Identities = 94/335 (28%), Positives = 179/335 (53%), Gaps = 19/335 (5%)
Query: 193 ILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMP 252
+LR + G + P+ +Q +P + G D++ A +G GKT VF L + Q+++
Sbjct: 62 LLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTL-----QQIEP- 115
Query: 253 FIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQ 312
+ E L++C +RELA Q + F ++L P++R+ + GG+ + + ME +
Sbjct: 116 -VDGEVSV-LVLCHTRELAFQIKNEYARFSKYL-----PDVRTAVFYGGINIKQDMEAFK 168
Query: 313 ---KGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMID-MGFEEDVRTIFSYFAG 368
K HI+VATPGRL ++ +K++++N ++ +DE D++++ + D++ +F
Sbjct: 169 DKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPP 228
Query: 369 QRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLT-VRQDLEPAQPEARTVQLLH 427
Q+Q ++FSAT+ +I+ + + P+ + V +L ++Q + +A+ ++
Sbjct: 229 QKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKIND 288
Query: 428 CLQKTP-PPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDV 486
L +IF + + + L ++ IHGG QEER + +AF+ +K +
Sbjct: 289 LLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRI 348
Query: 487 LVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
VATDV +G+D + VINYDMP+ ++Y+HR+
Sbjct: 349 CVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRV 383
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 146 bits (354), Expect = 8e-36
Identities = 86/247 (34%), Positives = 134/247 (54%), Gaps = 12/247 (4%)
Query: 184 FQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMF 243
FQ M + +LR + KG + PTPIQ + +P +L GRD++G+A TGSGKT F +P+I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI-- 128
Query: 244 CLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVA 303
+ +K + N LI+ P+RELA QT +++ F + ++RS +GGV+
Sbjct: 129 ---EHLKST-LANSNTRALILSPNRELALQTVKVVKDFSK------GTDLRSVAIVGGVS 178
Query: 304 VSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIF 363
+ E ++ I+VATPGR + + + + L+ Y+ DEADR+ +MGF + I
Sbjct: 179 LEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEIL 238
Query: 364 SYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVGRAGAASLTVRQDLEPAQPEARTV 423
RQTLLFSAT+P+ + +FA++ L PV V + S ++ + R
Sbjct: 239 HALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREA 298
Query: 424 QLLHCLQ 430
LL LQ
Sbjct: 299 ALLCILQ 305
Score = 78.2 bits (184), Expect = 3e-15
Identities = 41/117 (35%), Positives = 57/117 (48%)
Query: 432 TPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATD 491
+P TL+F K V+ V E L+ G I+G DQE R + FR G+ ++LV TD
Sbjct: 345 SPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTD 404
Query: 492 VASKGLDFANIQHVINYDMPEDIENYVHRIXXXXXXXXXXXXXXXXXXPDHSVLRDL 548
VAS+G+D + +VINYD P + +VHR+ D L DL
Sbjct: 405 VASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDL 461
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 125 bits (302), Expect = 2e-29
Identities = 91/370 (24%), Positives = 177/370 (47%), Gaps = 30/370 (8%)
Query: 164 IRNKLRIL-VEGDDPPPPIRTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNG--R 220
+R KL L + + P +++F+ ++ +L+G+ + QKP+ IQ + +P +L+ R
Sbjct: 95 VRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPR 154
Query: 221 DMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQH 280
+MIG + +G+GKT F L ++ + +P P + + PSRELA+Q D++
Sbjct: 155 NMIGQSQSGTGKTAAFALTMLS---RVDASVP-----KPQAICLAPSRELARQIMDVVTE 206
Query: 281 FIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCR 340
++ ++ + I+ + G ++ I++ TPG +MD++ ++ + +
Sbjct: 207 MGKYTEVKTAFGIKDSVPKGAKIDAQ----------IVIGTPGTVMDLMKRRQLDARDIK 256
Query: 341 YLCMDEADRMIDM-GFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNV 399
+DEAD M+D G + I Q +LFSAT ++++ +A + +
Sbjct: 257 VFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRL 316
Query: 400 GRAGAASLTVRQDLEPAQPEARTVQLLHCLQK--TPPPTLIFAERKQDVDAVHEYLLLKG 457
+ ++Q Q E +L L T ++IF ++K + + + G
Sbjct: 317 KTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG 376
Query: 458 VEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMP------ 511
+ G + +R +++FR G VLV T+V ++G+D + + V+NYDMP
Sbjct: 377 HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGR 436
Query: 512 EDIENYVHRI 521
D + Y+HRI
Sbjct: 437 PDPQTYLHRI 446
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 121 bits (291), Expect = 3e-28
Identities = 102/339 (30%), Positives = 164/339 (48%), Gaps = 24/339 (7%)
Query: 197 LEAKGIQKPTPIQVQGMPAVL-NGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIR 255
L G +K TP+Q + + V N + + A TG+GKTL F L L+ + P +
Sbjct: 53 LSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGK---PRLN 109
Query: 256 NEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTGSPEIRSCLAIGGVAVSECMEVVQKG- 314
+ + +I+ P+RELA +Q F KLT IR AIGG + +++G
Sbjct: 110 SSKIHSVILSPTRELA------LQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGN 163
Query: 315 VHIMVATPGRLMDMLDKKMVRLNVCR-YLCMDEADRMIDMGFEEDVRTIF-SYFAGQRQT 372
++++ATPGRL D L + ++ +DEADR++DMGF E + I + + +
Sbjct: 164 ANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRK 223
Query: 373 LLFSATMPKKIQNFARSAL---VRPVTVNVGRAGAASLTVRQDLEPAQPE---ARTVQLL 426
L FSATMP K+ N R L + + V Q + + + + ++ LL
Sbjct: 224 LCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLL 283
Query: 427 HCLQKTPPPT--LIFAERKQDVDAVHEYL--LLKGVEAVAIHGGKDQEERSRAVEAFRRG 482
L + P + ++F VD V L LK + +H G +R E+FR+
Sbjct: 284 QQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLK-IPCFILHSGLTTAQRRSITESFRKC 342
Query: 483 EKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRI 521
+ +L ATDV ++G+DF NI V+ P + ++Y+HRI
Sbjct: 343 QSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRI 381
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 105 bits (252), Expect = 2e-23
Identities = 78/330 (23%), Positives = 153/330 (46%), Gaps = 11/330 (3%)
Query: 182 RTFQHMKFPKGILRGLEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPII 241
+TF + R + +KPT +Q + +P L G+D++ A TGSGKT + +PI+
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 242 MFCLEQEVKMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKLTG--SPEIRSCLAI 299
L+Q K G + L++ P+RELA+Q +++++ KLT S IR
Sbjct: 74 ELLLKQ--KQIDENQRGIFALLLVPTRELAQQVYNVLE------KLTAFCSKHIRFINVA 125
Query: 300 GGVAVSECMEVVQKGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDV 359
+ + ++ I++ATP R + + ++ L+ ++L +DEAD M+ G+ ED+
Sbjct: 126 TNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDM 185
Query: 360 RTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNV-GRAGAASLTVRQDLEPAQP 418
+T+ Q+ L SAT+ K I + + P + V + + LT Q
Sbjct: 186 KTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEASGKLTQYVVKCSEQD 245
Query: 419 EARTVQLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEA 478
+ +L L+ LIF + +L G++++ ++ R +E
Sbjct: 246 KFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQ 305
Query: 479 FRRGEKDVLVATDVASKGLDFANIQHVINY 508
+ +G +++ATD + + +++ +++
Sbjct: 306 YNKGLYQIIIATDESGMMGEIEELENNVDF 335
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 441 ERKQDVDAVHEYLLLKGVEAVAIHGGKDQE-----ERSRAVEAFRRGEKDVLVATDV--- 492
E + +VD V E ++ + + KDQE + S A + +K V D
Sbjct: 328 ELENNVDFVEEEVI--STDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYG 385
Query: 493 ASKGLDFANIQHVINYDMPEDIENYVHRI 521
++GLDF N+ V+N+DMP + ++Y+HRI
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSYIHRI 414
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 104 bits (249), Expect = 4e-23
Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 13/198 (6%)
Query: 202 IQKPTPIQVQGMPAVLN--GRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPFIRNEGP 259
I PT IQ +PA+LN +D A TGSGKTL + LPI+ + + R G
Sbjct: 159 ISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNL-HTRTSGI 217
Query: 260 YGLIICPSRELAKQTHDIIQHFIRHLKLTGSPE---IRSCLAIGGVAVSECMEVVQKGVH 316
Y +I+ P+REL +Q +++ KL +P I SC IGG ++KGV+
Sbjct: 218 YAVIMAPTRELCQQIYNVAN------KLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVN 271
Query: 317 IMVATPGRLMDMLDK-KMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLF 375
I++ TPGRL D L+ + + ++ R++ +DE DR++DMGFEE + I SY Q +
Sbjct: 272 ILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKK 331
Query: 376 SATMPKKIQNFARSALVR 393
++P + SA ++
Sbjct: 332 DLSIPSRKVTMLCSATMK 349
Score = 51.2 bits (117), Expect = 4e-07
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 463 IHGGKDQEERSRAVEAFRRGEKD---VLVATDVASKGLDFANIQHVINYDMPEDIENYVH 519
+HG Q+ R+ + F E +L+ TDVA++GLD N+ V+ YD P ++Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 520 RI 521
RI
Sbjct: 533 RI 534
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.9 bits (146), Expect = 1e-10
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 191 KGILRGLEAKGIQKPTPIQV-QGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEV 249
+ I RG + P +Q + P G D+ A TGSGKTL + +PI+ CL
Sbjct: 144 QNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQ-CLSHRT 202
Query: 250 KMPFIRNEGPYGLIICPSRELAKQTHDIIQHFIRHLKL-----TGSPEIR-SCLAIGGVA 303
+P +R ++I P+REL Q ++++ L TG +R + G
Sbjct: 203 -VPRLRC-----VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDE 256
Query: 304 VSECMEVVQKGVHIMVATPGRLMDML-DKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTI 362
+EC + ++V+TPGRL+D + + + L RY+ +DEADR++D F++ V T+
Sbjct: 257 -NECR------IDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTV 309
Score = 59.7 bits (138), Expect = 1e-09
Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 346 EADRMIDMGFEEDVRTIFSY-FAGQRQTLLFSATM---PKKIQNFA----RSALVRPVTV 397
+ D+ I F D+ T+ Y Q L+FSAT+ P KI + R LV+ +
Sbjct: 327 DLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDM 386
Query: 398 NVGRAG-----AASLTVR---QDLEPAQPEARTVQLLHCLQ-KTPPPTLIFAERKQDVDA 448
V G A +V Q+ + + + L H + K L F + +
Sbjct: 387 EVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHLIHSKNLTNILCFVKSNEAAAR 446
Query: 449 VHEYLLL------KGVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANI 502
+H L L + ++ER + + F G+ ++LV +D+ ++G+D AN
Sbjct: 447 LHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANT 506
Query: 503 QHVINYDMPEDIENYVHRI 521
Q+VINYD P + +YVHRI
Sbjct: 507 QNVINYDPPLSVRSYVHRI 525
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 46.8 bits (106), Expect = 9e-06
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 13/187 (6%)
Query: 344 MDEADRMIDMGFEEDVRTIFSYFAGQRQTL-LFSATMPKKIQNFARSALVRPVTVNVGRA 402
+DEA ++ G + S +G L L SAT P++++ AR V +
Sbjct: 1321 IDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYV-LRET 1379
Query: 403 GAASLTVRQDLEPAQPEARTVQLLHCLQKTPP-----PTLIFAERKQDVDAVHEYLLLKG 457
A + L P + L +++T +IF K+DV+ +H L
Sbjct: 1380 STARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSD 1439
Query: 458 VEA---VAIHGGK-DQEERSRAVEAFRR--GEKDVLVATDVASKGLDFANIQHVINYDMP 511
+ A V I+ G EER +AFR G+ +++AT G+++ ++ V++Y +P
Sbjct: 1440 LFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLP 1499
Query: 512 EDIENYV 518
+YV
Sbjct: 1500 ASSMDYV 1506
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 46.8 bits (106), Expect = 9e-06
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 13/187 (6%)
Query: 344 MDEADRMIDMGFEEDVRTIFSYFAGQRQTL-LFSATMPKKIQNFARSALVRPVTVNVGRA 402
+DEA ++ G + S +G L L SAT P++++ AR V +
Sbjct: 1321 IDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYV-LRET 1379
Query: 403 GAASLTVRQDLEPAQPEARTVQLLHCLQKTPP-----PTLIFAERKQDVDAVHEYLLLKG 457
A + L P + L +++T +IF K+DV+ +H L
Sbjct: 1380 STARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSD 1439
Query: 458 VEA---VAIHGGK-DQEERSRAVEAFRR--GEKDVLVATDVASKGLDFANIQHVINYDMP 511
+ A V I+ G EER +AFR G+ +++AT G+++ ++ V++Y +P
Sbjct: 1440 LFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLP 1499
Query: 512 EDIENYV 518
+YV
Sbjct: 1500 ASSMDYV 1506
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 457 GVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIEN 516
G++A H G ++ ER R ++ G ++VAT G+D +++ VI++ P+ +E
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 517 Y 517
Y
Sbjct: 827 Y 827
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 180 PIRTFQHMKFPKGILRG-LEAKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTL 238
P+ ++ K G L+ KG +K Q++ + L+G+D+ + TG GK+L + L
Sbjct: 497 PMLSYPWSKEVLGCLKHKFHLKGFRKN---QLEAINGTLSGKDVFILMPTGGGKSLCYQL 553
Query: 239 PIIM 242
P ++
Sbjct: 554 PAVI 557
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 457 GVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYD 509
G AV G Q+ ++ V+ F++GE + L+AT + +GLD + +I YD
Sbjct: 466 GQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 36.7 bits (81), Expect = 0.010
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 436 TLIFAERKQDVDAVHEY---LLLKGVEAVAI--HGGKDQEERSRA-------VEAFRRGE 483
T+IF ERK + + L L + A + HG DQ E S + F+ G+
Sbjct: 364 TVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGK 423
Query: 484 KDVLVATDVASKGLDFANIQHVINYDMPEDIENYV 518
+VL+AT VA +G+D + VI +++ + YV
Sbjct: 424 YNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 36.3 bits (80), Expect = 0.013
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 466 GKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYD 509
G +Q ++ ++ FR G + LVAT + +GLD + +I YD
Sbjct: 514 GMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYD 557
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 457 GVEAVAIHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANI 502
G++A A+ G + ER ++ FR+ + VLV V ++G D NI
Sbjct: 289 GIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNI 334
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 199 AKGIQKPTPIQVQGMPAVLNGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEVKMPF 253
++ I+K Q + + NG +I T SGK+L++ +PI+ LE F
Sbjct: 306 SRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAF 360
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGE 483
+LL L LIF + + +D + ++L + G + + G E+R E F +
Sbjct: 998 RLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDD 1057
Query: 484 K--DVLVATDVASKGLDFANIQHVINYD 509
K +++T G++ VI YD
Sbjct: 1058 KIPVFILSTRSGGLGINLTGADTVIFYD 1085
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 570 PDVPAPAGQGCSYCAGLGHRITECP 594
PD P P G C C GH I CP
Sbjct: 175 PDKPPPPGYICYRCGQKGHWIQACP 199
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 424 QLLHCLQKTPPPTLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGE 483
++L L T TL+F + Q + + +YL K + + + G ++R + F +
Sbjct: 1194 RILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPK 1253
Query: 484 KDV---LVATDVASKGLDFANIQHVINYD 509
DV +++T GL+ VI +D
Sbjct: 1254 SDVYIFMLSTRAGGLGLNLQTADTVIIFD 1282
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 436 TLIFAERKQDVDAVHEYLLLKGVEAVAIHGGKDQEERSRAVEAF 479
+++F++ +D +H L G V + GG + R+ +EAF
Sbjct: 813 SIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAF 856
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 29 VDNYEPYVPIKEXXXXXXXXXXXXXXXT-AEAAADTKSSSENDHDDETSQEEWGR--RYN 85
+DN P P++E + A D S+ D+E +EW + N
Sbjct: 6 LDNNMPTTPVEEKIPVASYSPSSSGSSSGASLLVDIMCGSKETEDEEVDSDEWDKPETEN 65
Query: 86 VSLLDQ 91
+S LD+
Sbjct: 66 ISDLDE 71
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 341 YLCMDEADRMIDMGFEEDVRTIFSYFAGQRQTLLFSATMPKKIQNFARSALVRPVTVNVG 400
+ C D ++ID F+ D RTIF Q + S+ NF ++P
Sbjct: 102 FRCHDCRKQIIDSNFKRDNRTIFCNDCKQVRHPSRSSDESADYHNFEVDVTIKPTETKSS 161
Query: 401 RAGAASLTVRQDLEPAQP 418
SL++ + + P +P
Sbjct: 162 VESNKSLSI-EIMSPQKP 178
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.137 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,636
Number of Sequences: 5004
Number of extensions: 99983
Number of successful extensions: 423
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 57
length of query: 620
length of database: 2,362,478
effective HSP length: 77
effective length of query: 543
effective length of database: 1,977,170
effective search space: 1073603310
effective search space used: 1073603310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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