GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001798-TA|BGIBMGA001798-PA|undefined
         (905 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    26   1.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    26   1.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   5.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   9.3  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 435 LYPPNDAPQIDLYDTDSVSSFSAES 459
           LY P+    IDLY+T SVS+F+  S
Sbjct: 37  LYTPSST--IDLYNTSSVSNFNESS 59


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 435 LYPPNDAPQIDLYDTDSVSSFSAES 459
           LY P+    IDLY+T SVS+F+  S
Sbjct: 37  LYTPSST--IDLYNTSSVSNFNESS 59


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)

Query: 774 GRTGQDCAQYV-WSAT 788
           G TG+DC +YV W +T
Sbjct: 90  GYTGKDCGEYVDWCST 105


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 107 DEKMETTSLATTRAMEDYDYVSSKAPESDGDQEVDGQGNPKTDGSEQTLAE 157
           + KME   +              K+P SD  QE DG+   K +  E+   E
Sbjct: 827 ERKMEPPGVPLNSTPRSTPDKREKSPTSDKAQEADGEVVVKKEVDEEERLE 877


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.130    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,805
Number of Sequences: 317
Number of extensions: 8324
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 905
length of database: 114,650
effective HSP length: 63
effective length of query: 842
effective length of database: 94,679
effective search space: 79719718
effective search space used: 79719718
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)