Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001798-TA|BGIBMGA001798-PA|undefined
(905 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical... 35 0.30
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 34 0.52
Z83731-8|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr... 32 1.6
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr... 32 1.6
Z49068-10|CAA88860.1| 556|Caenorhabditis elegans Hypothetical p... 31 2.8
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 30 8.5
>AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical
protein Y71A12B.11 protein.
Length = 286
Score = 34.7 bits (76), Expect = 0.30
Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 5/154 (3%)
Query: 26 RKDDVSDGIEQKANDQSYDDDFLDSPXXXXXXXXXLTDSINYRNDTANYEDPVETSTAPD 85
+ + SD E A+D+S + + D +T Y + D
Sbjct: 105 KSPEASDDSESDASDESESESESEDESESEGFDES-EDEEEVPKETGTYAFESKPEALDD 163
Query: 86 YVTQESDVIYE----DTEVFNSTYADEKMETTSLATTRAMEDYDYVSSKAPESDGDQEVD 141
++ SDV ++E + + +E +E T +E + ++ E + +++ D
Sbjct: 164 SESEASDVSESKDESESEGSDDSEDEEYVEETCTDALNQLEPESDAADESVEEEEEEDED 223
Query: 142 GQGNPKTDGSEQTLAEGRQFNGPTQPVHKNKSST 175
+ +D SE+ AEG P + + + ++T
Sbjct: 224 SDDSDDSDDSEEEEAEGSTAQAPAEKANSSTTTT 257
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 33.9 bits (74), Expect = 0.52
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 65 INYRNDTANYEDPVETSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDY 124
++ +D + PVE S PD + + DVI E+ +V + E +E ++D
Sbjct: 11 VHLSDDEEHAVAPVEDSENPDVIQLDDDVIPEE-DVPDDEETAENLENLE----NVLDDS 65
Query: 125 DYVSSKAPESDGDQEVDGQGNPKTDGSE 152
+ ++ + E+ DQEV+ + NP D +
Sbjct: 66 EIIAENSGEA--DQEVEEEDNPFADDDD 91
>Z83731-8|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
protein F16A11.3b protein.
Length = 1364
Score = 32.3 bits (70), Expect = 1.6
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 61 LTDSINYRNDTANYED-PVETSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTR 119
L D + R++ N + PV S D + +E NST K +T T
Sbjct: 512 LIDKFSKRSNPNNPQRFPVFDSANSDSTLSSNSSNNNSSEQQNSTGIAAKCSSTDDLTKL 571
Query: 120 AMEDYDYVSSKAPE--SDGDQEVDGQGNPKTDGSEQTLA----EGRQFNGPTQPVHKNKS 173
+ED DY+ + P+ +D D D + + + E++ +G Q + P K+ S
Sbjct: 572 GLEDDDYMENSGPKFNTDEDSTNDSDSDDEDNDFEKSFVADEDDGEQDDSPLSIEIKSSS 631
Query: 174 ST 175
S+
Sbjct: 632 SS 633
>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
protein F16A11.3b protein.
Length = 1364
Score = 32.3 bits (70), Expect = 1.6
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 61 LTDSINYRNDTANYED-PVETSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTR 119
L D + R++ N + PV S D + +E NST K +T T
Sbjct: 512 LIDKFSKRSNPNNPQRFPVFDSANSDSTLSSNSSNNNSSEQQNSTGIAAKCSSTDDLTKL 571
Query: 120 AMEDYDYVSSKAPE--SDGDQEVDGQGNPKTDGSEQTLA----EGRQFNGPTQPVHKNKS 173
+ED DY+ + P+ +D D D + + + E++ +G Q + P K+ S
Sbjct: 572 GLEDDDYMENSGPKFNTDEDSTNDSDSDDEDNDFEKSFVADEDDGEQDDSPLSIEIKSSS 631
Query: 174 ST 175
S+
Sbjct: 632 SS 633
>Z49068-10|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 31.5 bits (68), Expect = 2.8
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 74 YEDPVETSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDYDYVSSKAPE 133
Y P E TA + + ++V+ + ++ F+ E E + ME D + AP
Sbjct: 410 YTHPPEQGTAKEDIVVPAEVVSQFSKEFDIDAIAE--EQNQIVEGLPMES-DII---APH 463
Query: 134 SDGDQEVDGQGNPKTDGSE--QTLAEGRQFNGPTQ 166
+ D+E D +TD +E QT+ GR+ GPT+
Sbjct: 464 NS-DEEEDDDDEMETDVNEKKQTVTSGRKVKGPTK 497
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 29.9 bits (64), Expect = 8.5
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 64 SINYRNDTANYEDPVETSTAPDYVT--QESDVIYED--TEVFNSTYADEKMETTSLATTR 119
+IN R A Y+ + P VT Q VI V+ T + MET++ T+
Sbjct: 214 AINTRTSMA-YDLSMIIENIPTLVTDYQSQGVILSSFIVTVYRYTKSVYFMETSAFTTSD 272
Query: 120 AMEDYDYVSSKAPESDGDQEVDGQGNPKT 148
AM DY + + AP SD +D N ++
Sbjct: 273 AMIDYLHSVTIAPSSDDQPLLDAIANSQS 301
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.313 0.130 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,142,939
Number of Sequences: 27539
Number of extensions: 900504
Number of successful extensions: 1788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1784
Number of HSP's gapped (non-prelim): 8
length of query: 905
length of database: 12,573,161
effective HSP length: 88
effective length of query: 817
effective length of database: 10,149,729
effective search space: 8292328593
effective search space used: 8292328593
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -