GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001798-TA|BGIBMGA001798-PA|undefined
         (905 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    30   0.097
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   4.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 29.9 bits (64), Expect = 0.097
 Identities = 12/56 (21%), Positives = 29/56 (51%)

Query: 468  DVYLILPGANTDVDALSVLPANPDPESQPGMMGKWHLSVRCDTCDYRLCVMARAQI 523
            DV + +PG +     L++  +  + ES+  ++G W + +     DY +C+ ++  +
Sbjct: 1194 DVRVHVPGESESETVLTLAWSESNVESKGRLLGFWRVEMPRSNADYEVCIGSQIMV 1249



 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 691 ELRLLTGISPAAQLLTSGQTANVIVSATIPTNAQP 725
           E+ +L  I    Q+ T G+ A  + S  +PT+ +P
Sbjct: 129 EVNILKSIVGQLQVDTQGENAVKVNSVQVPTDDEP 163


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 14/79 (17%), Positives = 32/79 (40%)

Query: 81  STAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDYDYVSSKAPESDGDQEV 140
           +T P   +  +     + + +N+   D K     ++  RA+ D   V +     +G  E+
Sbjct: 354 ATEPTLFSNVTPKFPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEI 413

Query: 141 DGQGNPKTDGSEQTLAEGR 159
           +       D ++ T+ + R
Sbjct: 414 NQNIAQNIDHAKNTIIDYR 432


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 16/64 (25%), Positives = 26/64 (40%)

Query: 237 NLHSSASTKDREVSEALSKLMLKYQGVHTDTASDGTMRALASAAKLVPYDSALFVITDKG 296
           N+H  + +   + +E L    L  Q   TD      +RALA+    +P+   L     +G
Sbjct: 94  NVHQRSLSSFLKTAEVLRVSGLTQQADQTDRDELSHVRALAAGGNHLPFHEKLVESFPRG 153

Query: 297 AGDP 300
              P
Sbjct: 154 GSLP 157


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 651 HHETLRSTSNITTSRIVSQLHFEVTN 676
           H     S S++T SR++  LH ++ N
Sbjct: 132 HRAACHSGSSLTKSRLMRCLHHDIEN 157


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,212
Number of Sequences: 429
Number of extensions: 10227
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 7
length of query: 905
length of database: 140,377
effective HSP length: 64
effective length of query: 841
effective length of database: 112,921
effective search space: 94966561
effective search space used: 94966561
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)