Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001797-TA|BGIBMGA001797-PA|IPR002737|Protein of unknown
function DUF52
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 146 3e-36
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 28 1.9
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 5.8
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 5.8
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 5.8
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 26 7.7
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 146 bits (355), Expect = 3e-36
Identities = 93/277 (33%), Positives = 137/277 (49%), Gaps = 27/277 (9%)
Query: 29 LSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIFILGPSHHV 88
L++QL ++ G R +I+PH +Q+ ++R+F+ GPSHH+
Sbjct: 22 LTKQLKSFIKNPTPETGK-RFVISPHAGYMYSGKVASQGFQQLDFSKIQRVFVFGPSHHI 80
Query: 89 RIAGCALSSLDKYQTPLYDLTIDKQIYAELEAT-RQFDRMDEQTDENEHSIEMHLPYIA- 146
C +S TPL DL +D+ + +L A+ FD M DE+EHS+EM P +A
Sbjct: 81 FTRKCLVSRASICSTPLGDLKVDEDLCQKLVASDNSFDSMTLDVDESEHSLEMQFPLLAF 140
Query: 147 -KVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNLLVISSDFCHWGSRFRYT 205
+ + I+PI++G+LT L+ Y+ D N VISSDFCHWG RF YT
Sbjct: 141 HLLKQGCLGKVKIVPIMIGALTSTTMMAAAKFLSQYIKDESNSFVISSDFCHWGRRFGYT 200
Query: 206 -------------WKDSSRG-----HIYQSIEWLDKLGMDLIEKMDPKAFTDYLNKYGNT 247
K RG IY+SI LD +GM +IE F++YL NT
Sbjct: 201 LYLNDTNQLEDAVLKYKRRGGPTSPKIYESISNLDHIGMKIIETKSSDDFSEYLKTTQNT 260
Query: 248 ICGRHPIGVLLQAISKLSSQSNAPKMSLKFLKYAQSS 284
ICGR+PI ++++++ + KF+ YAQSS
Sbjct: 261 ICGRYPIELIMKSMECANFSER-----FKFISYAQSS 292
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 181 YLADPQNLLVISSDFCHWGSRFRYTWKDSSRGHIYQSIEW---LDKLGMDLIEKM--DPK 235
Y+ P+ I D C G + +K SS+ H Y E+ DK LI ++ DP
Sbjct: 74 YIIFPEEAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPV 133
Query: 236 AFTDYLNKYGNT 247
T +N + N+
Sbjct: 134 NTTRTINSHNNS 145
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 5.8
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 17 ALIIVLLNSGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVSPVVV 76
AL I + SEL+ ++LSK + P I+ H +++ P ++
Sbjct: 63 ALFIYSIVQISELAEIQKVFLSKTQSSLNPITLILNRHEAGNEGIYFILEVPKRIKPFLI 122
Query: 77 KRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQF 124
ILG +A L L Y I K+I EL R++
Sbjct: 123 ALPVILG------VASVMLGFLAHGMNKAYGWVIYKKIGPELRMRRRY 164
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 95 LSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENE 135
L LD + P D+ + QI ++ T D MD+QTD +E
Sbjct: 639 LKPLD-FVKPHSDVFVSHQISSDKNYTDDEDSMDDQTDVDE 678
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 221 LDKLGMDLIEKMD-PKAFTDYLNKYGNTICGRHPIGVLLQAISKLSSQSNAPKMSL 275
LD +DL+ + D P + DYL++ G T H ++ + K S N K S+
Sbjct: 510 LDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSV 565
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 227 DLIEKMDPKAFTDYLNKYGNTICGRHPIGVLLQAISKLSSQSNAPKMSLKFLKYAQ-SSQ 285
DL +P + TD KY NT+ H +L + ++ S S++ S ++Q SSQ
Sbjct: 59 DLDSNFEPFSITDDYGKYENTLVS-HSSTILNEPYNESPSSSSSDSSSRSTSPFSQLSSQ 117
Query: 286 CM 287
+
Sbjct: 118 SL 119
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 118 LEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVGSLTPEK 170
L T Q+D +E D ++ + + T F+I P L+G+L P++
Sbjct: 110 LYLTTQYDESNEVLDGDDEVSLLVKSLCPHPTDGLLTDFSITPALMGNLVPQQ 162
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,211
Number of Sequences: 5004
Number of extensions: 49822
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 8
length of query: 304
length of database: 2,362,478
effective HSP length: 72
effective length of query: 232
effective length of database: 2,002,190
effective search space: 464508080
effective search space used: 464508080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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