Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001797-TA|BGIBMGA001797-PA|IPR002737|Protein of unknown
function DUF52
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 255 3e-68
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 136 2e-32
02_05_0229 + 27027513-27027735,27027840-27027978,27028076-270282... 34 0.12
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 30 2.7
12_01_0968 + 9750130-9750190,9750391-9750596 30 2.7
10_01_0104 + 1271635-1271878,1272542-1273134 29 6.1
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287 29 6.1
08_02_1193 + 25125419-25126810 29 6.1
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12... 29 6.1
09_04_0279 - 16349156-16349788,16352409-16353344 28 8.1
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 255 bits (625), Expect = 3e-68
Identities = 122/264 (46%), Positives = 164/264 (62%), Gaps = 8/264 (3%)
Query: 24 NSGSELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIFIL 82
N+ +L +LD WL A LT P RA+IAPH + P + R+F+L
Sbjct: 16 NNARKLDEELDGWLRAAGLTKSPDVRAVIAPHAGYSYSGRCAAYAFGNIDPTNISRVFLL 75
Query: 83 GPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHL 142
GPSHH CAL+ Y TP+ DL +D ++ EL AT +FD MD DE EHS+EMHL
Sbjct: 76 GPSHHYYTPKCALTRATIYSTPIGDLPVDHEVIEELNATGKFDFMDLSVDEAEHSMEMHL 135
Query: 143 PYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNLLVISSDFCHWGSRF 202
PY++KV + + ++PILVG+L + EA YG +L+ YL DP+N ISSDFCHWG+RF
Sbjct: 136 PYLSKVFQGHNVK--VVPILVGALNSQNEAMYGQLLSKYLDDPKNFFSISSDFCHWGTRF 193
Query: 203 RYTWKDSSRGHIYQSIEWLDKLGMDLIEKMDPKAFTDYLNKYGNTICGRHPIGVLLQAIS 262
YT+ D S G I++SIE LD++GM++IE +P AF YL +Y NTICGRHPI V L +
Sbjct: 194 SYTYYDKSHGAIHKSIEALDRMGMEIIETGNPDAFKQYLQEYENTICGRHPISVFLSMLK 253
Query: 263 KLSSQSNAPKMSLKFLKYAQSSQC 286
+ K+ + F++Y QSSQC
Sbjct: 254 HCLT-----KIKIGFVRYEQSSQC 272
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 136 bits (329), Expect = 2e-32
Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 5/118 (4%)
Query: 169 EKEAKYGAILAPYLADPQNLLVISSDFCHWGSRFRYTWKDSSRGHIYQSIEWLDKLGMDL 228
+ EA YG +L+ YL DP+N ISSDFCHWG+RF YT+ D S G I++SIE LD +GM++
Sbjct: 93 QNEAMYGQLLSRYLDDPKNFFSISSDFCHWGTRFSYTYYDKSHGAIHKSIEALDHMGMEI 152
Query: 229 IEKMDPKAFTDYLNKYGNTICGRHPIGVLLQAISKLSSQSNAPKMSLKFLKYAQSSQC 286
IE +P AF YL +Y NTICGRHPI V L + S+ K+ ++F++Y QSSQC
Sbjct: 153 IETGNPDAFKQYLQEYENTICGRHPISVFLSMLKHCST-----KIKIRFVRYEQSSQC 205
Score = 66.9 bits (156), Expect = 2e-11
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 28 ELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIFILGPSH 86
+L +LD WL A LT P A+IAPH + P + R+F+LGPSH
Sbjct: 5 KLDEELDGWLRAAGLTKSPDVSAVIAPHAGYSYSGRCAAYAFGNIDPTNISRVFLLGPSH 64
Query: 87 HVRIAGCALSSLDKYQTPLYDLTIDKQ 113
H CAL+ Y TP+ DL +D +
Sbjct: 65 HYYTPKCALTRATIYSTPIGDLPVDHE 91
>02_05_0229 +
27027513-27027735,27027840-27027978,27028076-27028211,
27028343-27028510
Length = 221
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 153 KTSFTIIPILVGSLTPEKEAKY-GAILAPYLADPQNLLVISSDFCHWGSRFRYT 205
+T ++I+ +L+ S K A + G +PYL + L++++SDF HW F T
Sbjct: 2 ETKYSILELLLVSAEGLKHAHHLGLYSSPYLVS-ETLMLMTSDFAHWHGMFAGT 54
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 119 EATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAIL 178
E TR+ D +D QT E ++ + H+ + + FT I ++ + +A +
Sbjct: 700 EITRRMDTLDVQTGEIQYDLAEHIAQTQEWQQSADAQFTNINNMMQQQHDDLQAYFRFQS 759
Query: 179 APYLADPQNLLVISSDF 195
+ + DP+ + DF
Sbjct: 760 SILIKDPERKPSLGGDF 776
>12_01_0968 + 9750130-9750190,9750391-9750596
Length = 88
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 113 QIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSF 156
Q+Y + E TR+ D +D QT E ++++ H+ ++ + F
Sbjct: 16 QMYEKGEITRRMDTLDVQTGEIQYNLTEHISQTLELQQSANAQF 59
>10_01_0104 + 1271635-1271878,1272542-1273134
Length = 278
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 119 EATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTII 159
E TR+ D +D QT + +H++E H+ + FT I
Sbjct: 214 EITRRMDTLDMQTGQIQHNLEEHIVQTQGWQQNADAQFTNI 254
>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
Length = 540
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 141 HLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYG 175
HLPYI +M+E ++P+LV ++ E + G
Sbjct: 382 HLPYIHAIMKETMRMHPVVPLLVPRMSREDASVAG 416
>08_02_1193 + 25125419-25126810
Length = 463
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 131 TDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAP 180
T+ E+ +E LPY+ V++E PILV E +A+ G P
Sbjct: 298 TEMEENDVEK-LPYLQAVVKEVMRLHPAAPILVPHRAEEDDAEIGGYAVP 346
>02_01_0020 -
127572-127637,127760-127819,127903-128004,128099-128194,
128649-128756,128849-128899,129018-130118
Length = 527
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 81 ILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENE 135
I P H + A S + + + I ++AEL+ RQ DR +E DE E
Sbjct: 39 IASPRRHFAFSANASSGSSRLKQIQSERVIH-DLFAELQRERQRDRQEEDEDEGE 92
>09_04_0279 - 16349156-16349788,16352409-16353344
Length = 522
Score = 28.3 bits (60), Expect = 8.1
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 90 IAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRM-DEQTDENEHSIEMHLPYIAKV 148
IAG SS + + + +L +++A+ AT + DR+ + NE I + LPYI +
Sbjct: 315 IAGGTESSSETIEWAISELLRKPEMFAK--ATEELDRIVGHRRWVNEKDI-LDLPYIEAI 371
Query: 149 MEEYKTSFTIIPILVGSLTPE 169
++E I P+L L+ E
Sbjct: 372 VKETMRLHPIGPLLAPRLSRE 392
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,756,957
Number of Sequences: 37544
Number of extensions: 289301
Number of successful extensions: 562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 11
length of query: 304
length of database: 14,793,348
effective HSP length: 82
effective length of query: 222
effective length of database: 11,714,740
effective search space: 2600672280
effective search space used: 2600672280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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