GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001797-TA|BGIBMGA001797-PA|IPR002737|Protein of unknown
function DUF52
         (304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2913| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   2e-07
SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19)                29   4.7  
SB_44490| Best HMM Match : TP2 (HMM E-Value=5.4)                       29   6.2  
SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)                     29   6.2  
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)            29   6.2  
SB_2038| Best HMM Match : rve (HMM E-Value=0.0076)                     28   8.2  

>SB_2913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/35 (68%), Positives = 27/35 (77%)

Query: 116 AELEATRQFDRMDEQTDENEHSIEMHLPYIAKVME 150
           AEL  T  FD M  +TDE+EHSIE+HLPYIAK ME
Sbjct: 3   AELMGTGFFDEMSSKTDEDEHSIELHLPYIAKAME 37


>SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19)
          Length = 374

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 79  IFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSI 138
           +F L   H+ R+A  A+SS  + +TP   +T    +  E   T+Q D   +    + HS+
Sbjct: 5   LFDLLAYHNQRVAAAAISSQSQNKTPQPHVTQSNHVTPE-HVTQQPDTKHQSPSTSSHSV 63


>SB_44490| Best HMM Match : TP2 (HMM E-Value=5.4)
          Length = 174

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 81  ILGPSHHVRIAGCA-LSSLDKYQTPLYDL 108
           I G   H R  GC  L++L+KYQ P Y L
Sbjct: 59  IKGTRTHTRTPGCEILATLNKYQLPTYKL 87


>SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)
          Length = 715

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 81  ILGPSHHVRIAGCA-LSSLDKYQTPLYDL 108
           I G   H R  GC  L++L+KYQ P Y L
Sbjct: 600 IKGTRTHTRTPGCEILATLNKYQLPTYKL 628


>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
          Length = 1850

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 82  LGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQT-DENEHSIEM 140
           L P  H  +A   + S+    +      I KQI A +E   +FD  +  T +E E+ +E 
Sbjct: 859 LRPLRHENLA--EIKSISPLGSDFEVACIPKQIAALIERCTEFDSRERPTAEEVENELEA 916

Query: 141 HLPYI---AKVMEEYKTSFTIIPI 161
           +  YI    K+ + + T  T  PI
Sbjct: 917 YQSYIRSSGKIKQMHVTIITSQPI 940


>SB_2038| Best HMM Match : rve (HMM E-Value=0.0076)
          Length = 656

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 141 HLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNL 188
           H     ++ E   T +T+    VG+    KE  Y   +AP+L +  NL
Sbjct: 89  HFTGYFRIKENTITEYTLTTFRVGNTPVSKELDYFGDVAPFLRENDNL 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,008,003
Number of Sequences: 59808
Number of extensions: 340600
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 8
length of query: 304
length of database: 16,821,457
effective HSP length: 82
effective length of query: 222
effective length of database: 11,917,201
effective search space: 2645618622
effective search space used: 2645618622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)