GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001796-TA|BGIBMGA001796-PA|undefined
         (272 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.96 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   5.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 22  PPTASGASSSRKVPSTVVKEKTRSKLNSTTIGESDISVLKTEMPDFEPENRAIAYG 77
           P T+  + S   VP T +   + S +NS T+ +  I+ +KT++    P  +A   G
Sbjct: 842 PTTSVISMSGTTVPITSLPASSTS-INSITVEKDVINDVKTQITTNTPAKKATNIG 896


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 138 IDLKSKDCEKFYDITSNSNTVQLLESLKNTE 168
           ID ++KD          SNTV+    LKNTE
Sbjct: 461 IDKETKDMNLEISTRPKSNTVENACVLKNTE 491


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 209 KHSNLDIDKFKEYEKTQKSLVELEKERHDLERLRTDFEKKFPDLTEKLLEEVSEK 263
           K+ N+DID     E+   + V    ++        + ++  PD  E      SEK
Sbjct: 27  KYDNVDIDVVLNTERLLNAYVNCLLDQGPCTPDAAELKRNLPDALENECSPCSEK 81


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 183 GYDKESGHKLLLDAVTDAIEGLENIKK 209
           GY++ES  + ++DAV      L N++K
Sbjct: 323 GYEQESKVQFVVDAVYAFALALHNLQK 349


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 209 KHSNLDIDKFKEYEKTQKSLVELEKERHDLERLRTDFEKKFPDLTEKLLEEVSEK 263
           K+ N+DID     E+   + V    ++        + ++  PD  E      SEK
Sbjct: 27  KYDNVDIDVVLNTERLLNAYVNCLLDQGPCTPDAAELKRNLPDALENECSPCSEK 81


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 183 GYDKESGHKLLLDAVTDAIEGLENIKK 209
           GY++ES  + ++DAV      L N++K
Sbjct: 413 GYEQESKVQFVVDAVYAFALALHNLQK 439


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 57  ISVLKTEMPDFEPENRAIAYGKFLRAMLEECLVDEKIEREETQI 100
           +S  + +  D E +   +  G  L  +LE C  DE    E+T+I
Sbjct: 495 LSKAELDKMDKEKKLEDLEMGTPLENILESCQQDETHAPEKTKI 538


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,849
Number of Sequences: 429
Number of extensions: 3473
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 272
length of database: 140,377
effective HSP length: 57
effective length of query: 215
effective length of database: 115,924
effective search space: 24923660
effective search space used: 24923660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)