GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001795-TA|BGIBMGA001795-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
         (383 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.050
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.35 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.47 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   5.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   5.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.5 bits (63), Expect = 0.050
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 173  PSLHSIGSETDSASGQSSSVRRPAPERPTTLEINRILRPAPTPNSPVSAGTSINSTP 229
            P L    SE +S  G S+S  RP PERP  +     L P+P+       G+   ++P
Sbjct: 1342 PRLAQDSSEDESYRGPSASGGRPVPERPERVP-TVDLSPSPSDRGRNDDGSDRLTSP 1397



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 14/53 (26%), Positives = 21/53 (39%)

Query: 260 PPPAYTEIDATPSPLSTPPHPQDSTPPRTQVITATPISGDIANSSRKYLDCHH 312
           PP + T + AT +  +T      +T   T   TAT +          +L  HH
Sbjct: 96  PPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHH 148


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 234 PDGYHLNRATPETSLPSPLPVTAFPEPPPAYTEIDATPSPLSTPPHPQDSTPPRTQVI 291
           P  +H + ATP     +PL  +++    PA  +I  TP      PHP ++  P+ + I
Sbjct: 430 PHHHHSHAATPHHQHSTPLAHSSY----PAAIQIGHTP---HHHPHPPETPGPQVETI 480


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 26.2 bits (55), Expect = 0.47
 Identities = 9/22 (40%), Positives = 18/22 (81%)

Query: 211 PAPTPNSPVSAGTSINSTPSSR 232
           P+PT +SP  +G+S +++P++R
Sbjct: 62  PSPTGSSPQHSGSSASTSPAAR 83


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 252  LPVTAFPEPPPAYTEIDATPS-PLSTPPHPQDSTPPRTQVITATPISGD-----IANSSR 305
            L V A P  P        T S  +   PHP D+ P     I   P  GD     I+++ +
Sbjct: 1361 LIVHAPPHSPQITLTATTTNSLTMKVRPHPTDNAPIHGYTIHYKPEFGDWDTAQISSTVQ 1420

Query: 306  KY-LDCHHCGMRVHTLVVREIGL 327
            KY L+   CG R    V    G+
Sbjct: 1421 KYTLENLLCGSRYQIYVTAYNGI 1443



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 201  TTLEINRILRPAPTPNSPVSAGTSINSTP 229
            TT  +   +RP PT N+P+  G +I+  P
Sbjct: 1378 TTNSLTMKVRPHPTDNAPIH-GYTIHYKP 1405



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 252  LPVTAFPEPPP 262
            +PV+  PEPPP
Sbjct: 1851 IPVSGSPEPPP 1861


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 354 FKNHNHYCPNCNKVIGYQLPFNYKKIF 380
           + N+N+Y  N N         NYKK++
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 354 FKNHNHYCPNCNKVIGYQLPFNYKKIF 380
           + N+N+Y  N N         NYKK++
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKLY 117


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,244
Number of Sequences: 429
Number of extensions: 6566
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 383
length of database: 140,377
effective HSP length: 59
effective length of query: 324
effective length of database: 115,066
effective search space: 37281384
effective search space used: 37281384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)