GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001794-TA|BGIBMGA001794-PA|IPR002110|Ankyrin
         (684 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   2.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   6.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 283 SVDVTSILNLDHMKDL-SPASNIFPTPPRSENVPSPISESQTSYYPSNSDYTLSPELSPV 341
           S+D ++++      +L  P S   P PP ++NVP   +       P      + P + PV
Sbjct: 741 SIDQSTVIQTGANVNLWQPLSVSIPPPPSAQNVPQNTNSQAIPRIP------ILP-MIPV 793

Query: 342 YCSDYEKYQDLT 353
           YC    +  D T
Sbjct: 794 YCVPVPQVNDST 805


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 544 YALVLSEITRNEYREQPPLFNVNHVNCD 571
           Y + LS +T N Y   P   N+ +VN +
Sbjct: 253 YGMALSPVTHNLYYNSPSSENLYYVNTE 280


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 293 DHMKDLSPASNIFPTPPRSENVPSPISESQTSYYPSNSDYTLSPELSPVYCSDYEKYQDL 352
           DH +  SP++++       E+   PI +S    +     Y  SP L       YE   + 
Sbjct: 44  DHYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLM------YENPDEE 97

Query: 353 TSYEECPN 360
             Y+E PN
Sbjct: 98  KRYQEHPN 105


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 308  PPRSENVPSPISESQTSYYPSNSDYTLSPELSPVYC 343
            PP S    + +  +Q +  P N D +  PELS   C
Sbjct: 1854 PPISVAETTFVGGNQGNVVPGNGDRSDRPELSEAEC 1889


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 308  PPRSENVPSPISESQTSYYPSNSDYTLSPELSPVYC 343
            PP S    + +  +Q +  P N D +  PELS   C
Sbjct: 1850 PPISVAETTFVGGNQGNVVPGNGDRSDRPELSEAEC 1885


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 16/79 (20%), Positives = 29/79 (36%)

Query: 187 GQVLVNSIQTDNYSEVDRALNSVKEIAQTSQQEQGYWEDVQDMIDGDYHSKESDILSEFF 246
           G+V V+     ++ +    L       Q  Q ++     V+ +  G  H    + L E F
Sbjct: 91  GEVNVHQRSLSSFLKTAEVLRVSGLTQQADQTDRDELSHVRALAAGGNHLPFHEKLVESF 150

Query: 247 PANQQFYEPIAIVPTSTPE 265
           P       P+   PT+  +
Sbjct: 151 PRGGSLPTPVTPTPTTVQQ 169


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,538
Number of Sequences: 429
Number of extensions: 8990
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 6
length of query: 684
length of database: 140,377
effective HSP length: 62
effective length of query: 622
effective length of database: 113,779
effective search space: 70770538
effective search space used: 70770538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)