GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001793-TA|BGIBMGA001793-PA|undefined
         (767 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    25   5.7  
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    25   5.7  
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    25   5.7  
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    25   7.5  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
          protein.
          Length = 942

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 49 KMYRPPAVPVTLIQTQTAQDPVHLAVAALMDTV 81
          K+ R P  P+T  QT    D VH  +   M+TV
Sbjct: 56 KIARKPFPPITERQTTRVLDLVHTDICGPMNTV 88


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 351 PVHP-AVAALMDIAPAIVVEAYHPPAVPATLIQ--AQRMQDPVHPAVAALMDIAPAIVVE 407
           P  P A AAL   A A    A    A PA +    A        PA A       + V  
Sbjct: 185 PAAPVATAALAATAFAATNAASVATAAPAAITAPAANAASTAAAPAAATAHAATASPVAT 244

Query: 408 AYHPPAVPATLIQAQRMQDPVHLAVAALMDIALAIVVEVYHPPAVPATL 456
           A      PAT+       DP   A  A  ++  A+V    +P A  A L
Sbjct: 245 AALAAGAPATVSTPMDKDDPAAAAAPATAEVPGAVVA---NPAATSAPL 290


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 741 MQAPQKNPPRPLVAALKDI 759
           M   +  PPRPL +ALKDI
Sbjct: 1   MSGNESLPPRPLGSALKDI 19


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 666 QAQTLQDPVHRAVAA-LMDTVPTVV---MEVYHPPAVPVTLMQAQTLQDPVHPAVAALMD 721
           +++T+  PV + V   +   VP  V   ++VY P   P+ +   Q ++ P++  +  +++
Sbjct: 162 KSKTVPVPVFQKVGVPVPHPVPIAVPHYVKVYIPQPYPLQVNVEQPIKIPIYKVIPKVIE 221

Query: 722 IAQAIVMEVYWPLAV----PVTLMQAPQKNPPRP 751
                 +E  +P+ V    PV +++  +   P+P
Sbjct: 222 KPVPYTVEKPYPIEVEKPFPVEVLKKFEVPVPKP 255



 Score = 25.0 bits (52), Expect = 7.5
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 508 VPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAAL 567
           VPV + Q      P HPV  A    VP  V +VY P   P+ +   Q  + P++ V+  +
Sbjct: 166 VPVPVFQKVGVPVP-HPVPIA----VPHYV-KVYIPQPYPLQVNVEQPIKIPIYKVIPKV 219

Query: 568 MD-TVPTVVMEVY 579
           ++  VP  V + Y
Sbjct: 220 IEKPVPYTVEKPY 232


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,117
Number of Sequences: 2123
Number of extensions: 30994
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 18
length of query: 767
length of database: 516,269
effective HSP length: 69
effective length of query: 698
effective length of database: 369,782
effective search space: 258107836
effective search space used: 258107836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)