Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001792-TA|BGIBMGA001792-PA|undefined
(141 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 50 1e-07
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 32 0.029
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.63
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 1.4
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 2.5
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 25 3.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 4.4
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 4.4
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 5.8
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 24 7.7
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 24 7.7
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy... 24 7.7
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 50.0 bits (114), Expect = 1e-07
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 9 LNVKTIPAGHCLGSVMFLFEI--NNQT--ILYTGDFRMNPENISAFGQLHKDNMPIKINT 64
+ V + A HC GS MF+FE +NQT +L+ GDFR + +++ +H I+
Sbjct: 268 ITVYVLDANHCPGSAMFVFETLQSNQTRRVLHCGDFRASKDHV-----MHPVLREKTIHK 322
Query: 65 IYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYN 124
+YLDTT+ N + FP + D ++ + + + + ++ G E V I
Sbjct: 323 VYLDTTYLNPKY-TFPPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381
Query: 125 ILNMKTYV 132
L+ + YV
Sbjct: 382 SLSSRIYV 389
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 32.3 bits (70), Expect = 0.029
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIK-INTIYLDTTFQNE 74
AGH LG+ M+ E+ IL+TGD+ + LH +P K + + ++T+
Sbjct: 181 AGHVLGACMYFVEMAGVNILFTGDYSREEDR-----HLHVAEVPPKRPDVLITESTYGTA 235
Query: 75 SFDNFPRRKDSIRML 89
S PR + R+L
Sbjct: 236 SHQ--PRLEKEARLL 248
>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 27.9 bits (59), Expect = 0.63
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 101 PTNRI-----ALHTSARYGYEFV-FNEIYNILNMKTYVSDDK 136
PTN++ AL S ++ + F+++ NILN TY DDK
Sbjct: 43 PTNKVLSELAALFESCNLIFDLIWFDDLQNILNQVTYELDDK 84
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 93 IKQWVDGEPTNRIALHTSARYG-YEFVFNEIYNILNMK 129
I +WVDG+PTN T Y YE F +I+ ++
Sbjct: 71 IDKWVDGDPTNNDFSGTRFEYDIYETEFRNGGDIIGVR 108
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 2.5
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 61 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ---WVDGE 100
+IN L N FD R K +NH+++ W+DG+
Sbjct: 903 EINNGELTIQKLNHEFDRLEREKSVAITAINHLEKENDWIDGQ 945
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 3.3
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 1 MDDGSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDF-RMNPENISAFGQLHKDNMP 59
M+D K V T+ G V+F+F N ++ T F R N N F L D
Sbjct: 153 MEDFEGKNTWVSTMEGGQSSAYVLFMFSENGFKVIPTDRFYRFNQRN--NFQTLSIDEAE 210
Query: 60 IKIN 63
K+N
Sbjct: 211 AKMN 214
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 4.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 93 IKQWVDGEPTNRIALHTSARYG-YEFVFNEIYNILNMK 129
+ +W DG+P N A +T Y YE F +I+ +K
Sbjct: 70 LDKWKDGDPRNNEANNTIYEYDIYETGFRNGGDIIGLK 107
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 4.4
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 78 NFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNM 128
N P+ + +L H K +G R+ + T R E++ + I M
Sbjct: 447 NHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPM 497
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 24.6 bits (51), Expect = 5.8
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIK-INTIYL 67
L + AGH LG ++ ++++LY D+ + + L+ + ++ +N
Sbjct: 130 LTITAYNAGHTLGGTLWSLIKESESVLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNT 189
Query: 68 DTTFQNESFDNFPRRK 83
T N S + P RK
Sbjct: 190 LITDANNSLVSIPSRK 205
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 73 NESFDNFPRRKDSIRML 89
NESFD FPR D ++ +
Sbjct: 413 NESFDGFPRYMDLLQSI 429
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.2 bits (50), Expect = 7.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 115 YEFVFNEIYNILN 127
YEF+ NE+Y +LN
Sbjct: 396 YEFLVNELYRLLN 408
>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 211
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 86 IRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEI 122
+RML+ +KQ +DG +IA+ Y + N I
Sbjct: 31 VRMLLRRLKQSLDGNEKAKIAILEQLPKSYFYFTNLI 67
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,829
Number of Sequences: 5004
Number of extensions: 30363
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 14
length of query: 141
length of database: 2,362,478
effective HSP length: 66
effective length of query: 75
effective length of database: 2,032,214
effective search space: 152416050
effective search space used: 152416050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)
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