Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001792-TA|BGIBMGA001792-PA|undefined
(141 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 56 1e-08
08_01_0053 + 365188-365376,365451-365729,365818-367341 55 2e-08
04_03_0810 - 19902049-19902069,19902195-19902400,19902523-199025... 52 1e-07
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 52 2e-07
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 49 2e-06
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 48 4e-06
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377... 41 3e-04
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 34 0.037
12_01_1034 - 10638984-10639376,10639905-10640093 30 0.61
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 28 2.5
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 26 9.9
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 56.0 bits (129), Expect = 1e-08
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFE-INNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
+N+ A HC G+V+ LFE N + +L+TGDFR + E + ++ I+T+ L
Sbjct: 715 VNLTCFDANHCPGAVIILFEPSNGKAVLHTGDFRFSSEMAN-----NRVLQSSPIHTLIL 769
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ N +D FP ++ I+ ++ I+ T + L S G E ++ E+ +L
Sbjct: 770 DTTYCNPRYD-FPTQEIVIQFVIEAIQAEAFNPKT--LFLIGSYTIGKERLYMEVARLLQ 826
Query: 128 MKTYVSDDK 136
K YV K
Sbjct: 827 KKIYVGAAK 835
>08_01_0053 + 365188-365376,365451-365729,365818-367341
Length = 663
Score = 55.2 bits (127), Expect = 2e-08
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 11 VKTIPAGHCLGSVMFLFE-INNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDT 69
V A HC G+VMFLFE + +L+TGD R+ P+ F L D ++LD
Sbjct: 90 VTAFDANHCPGAVMFLFEGASFGRVLHTGDCRLTPD----FRFLAAD-------YVFLDC 138
Query: 70 TFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMK 129
TF S +FP + DSIR ++N I W P + S G E + E+ + K
Sbjct: 139 TFAACSL-HFPSKDDSIRQVINCI--W--KHPNAPVVYLVSDMLGQEEILMEVSKVFGSK 193
Query: 130 TYVSDDK 136
YV DK
Sbjct: 194 IYVDRDK 200
>04_03_0810 -
19902049-19902069,19902195-19902400,19902523-19902559,
19902623-19902675,19903149-19903226,19903496-19903586,
19903773-19903917,19903988-19904227,19904313-19904523,
19904788-19905232
Length = 508
Score = 52.4 bits (120), Expect = 1e-07
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINN-QTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
++V + A HC G+ + F + + + L+TGDFR + +++ + L + +IN +YL
Sbjct: 235 VSVTLLEANHCPGAALIHFRLGDGKKYLHTGDFRAS-KSMQLYPLLQRG----QINLLYL 289
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ N + FP ++D I V K+++ EP I + + G E V+ I L
Sbjct: 290 DTTYCNPKY-KFPPKEDVIDFAVRTAKRYLQKEPKTLIVVGAYS-IGKENVYLAISKALQ 347
Query: 128 MKTY 131
+ Y
Sbjct: 348 VPIY 351
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 11 VKTIPAGHCLGSVMFLFEI---NNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
V + A HC G+V FLF N + ++TGDFR + I+ L I + ++L
Sbjct: 136 VVAVDANHCPGAVQFLFRSSGPNAERYVHTGDFRFSQSMITEPNLLEF----IGADAVFL 191
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQ 95
DTT+ N F FP +K+S+ +VN IK+
Sbjct: 192 DTTYCNPKF-TFPPQKESLEYVVNSIKR 218
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 48.8 bits (111), Expect = 2e-06
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 1 MDDGSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE-----NISAFGQLHK 55
+DD + + +V A HC G+VMFLFE +IL+TGD R+ P+ + + K
Sbjct: 85 VDDPAGAF-SVTAYDANHCPGAVMFLFEGQFGSILHTGDCRLTPDCVHNLPLKYIAKKGK 143
Query: 56 DNMPIKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGY 115
+N+ +++ ++LD TF ++ F P ++ +I+ ++ I W P G+
Sbjct: 144 ENI-CRLDFVFLDCTF-SKCFLKLPSKESAIQQVIACI--W--KHPHAPFVYLACDLLGH 197
Query: 116 EFVFNEIYNILNMKTYV 132
E + E+ K YV
Sbjct: 198 EEILIEVSRTFGSKIYV 214
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 47.6 bits (108), Expect = 4e-06
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 11 VKTIPAGHCLGSVMFLFEINNQTILYTGDFR--MNPENISAFGQLHKDNMP-IKINTIYL 67
V IPA HC GS+M+LF + +LYTGDFR + + A + D + ++ +YL
Sbjct: 90 VTAIPALHCPGSLMYLFRGDLGCMLYTGDFRWELRCKRARAAKKALLDALAGDTVDVLYL 149
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGE 100
D T+ + S +FP R +VN I+ D E
Sbjct: 150 DNTYCHPSL-SFPPRPIVAEQIVNIIRAHPDHE 181
>09_04_0020 +
13837257-13837281,13837364-13837550,13837655-13837727,
13837769-13837804,13838161-13838281,13838399-13838472,
13838594-13838730,13839262-13839325,13839693-13839758,
13840061-13840130,13840206-13840310,13840840-13840981,
13841343-13841439,13841939-13842460
Length = 572
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 7 KYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIY 66
K L+++ AGH LG+ M ++ + I+YTGD+ M P+ Q+ + +K++ +
Sbjct: 161 KDLSIRAYYAGHVLGAAMIYAKVGDAAIVYTGDYNMTPDRHLGAAQIDR----LKLDLLI 216
Query: 67 LDTTF 71
++T+
Sbjct: 217 TESTY 221
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 34.3 bits (75), Expect = 0.037
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ +I +LYTGD+
Sbjct: 176 AGHVLGAAMFMVDIAGVRVLYTGDY 200
>12_01_1034 - 10638984-10639376,10639905-10640093
Length = 193
Score = 30.3 bits (65), Expect = 0.61
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 56 DNMPIKINT-IYLDTTFQNESFDNFPRRKDS--IRMLVNHIKQWVDGEPTNRIALHTSAR 112
D MP+ N + L + + FP+ D I M V+++ +WV+G P + R
Sbjct: 82 DTMPLTYNLQVKLFDVWGIDFIGPFPKSYDCEYILMAVDYVSKWVEGMPCRATEAKHACR 141
Query: 113 YGYEFVF 119
+E +F
Sbjct: 142 MFHEIIF 148
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 81 RRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGY 115
+ + ++ ML H+ WV E +I HT + G+
Sbjct: 187 KAEKNVEMLSEHLADWVSEEDGKKIVFHTFSNTGW 221
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 27 FEINNQTILYTGDFRMNPE 45
+EINN T+ TG+F +N E
Sbjct: 730 YEINNSTVENTGNFSINSE 748
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,235,782
Number of Sequences: 37544
Number of extensions: 158530
Number of successful extensions: 256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 11
length of query: 141
length of database: 14,793,348
effective HSP length: 75
effective length of query: 66
effective length of database: 11,977,548
effective search space: 790518168
effective search space used: 790518168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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