Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001792-TA|BGIBMGA001792-PA|undefined
(141 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022254-1|AAH22254.1| 434|Homo sapiens DCLRE1C protein protein. 102 4e-22
AL360083-8|CAI40025.1| 434|Homo sapiens DNA cross-link repair 1... 102 4e-22
AL360083-7|CAI40024.1| 692|Homo sapiens DNA cross-link repair 1... 102 4e-22
AJ296101-1|CAC37570.1| 692|Homo sapiens artemis protein protein. 102 4e-22
AL360083-3|CAI40020.1| 572|Homo sapiens DNA cross-link repair 1... 82 8e-16
AF395752-1|AAM53260.1| 572|Homo sapiens Athabascan SCID transcr... 82 8e-16
AF395751-1|AAM53259.1| 572|Homo sapiens Athabascan SCID transcr... 82 8e-16
AF395748-1|AAM53256.1| 572|Homo sapiens Athabascan SCID transcr... 82 8e-16
AF395747-1|AAM53255.1| 572|Homo sapiens Athabascan SCID transcr... 82 8e-16
AK021422-1|BAB13820.1| 577|Homo sapiens protein ( Homo sapiens ... 80 2e-15
DQ504427-1|ABF47101.1| 577|Homo sapiens DNA cross-link repair 1... 80 3e-15
BC009185-1|AAH09185.1| 577|Homo sapiens DCLRE1C protein protein. 80 3e-15
AL360083-5|CAI40022.1| 577|Homo sapiens DNA cross-link repair 1... 80 3e-15
AF395750-1|AAM53258.1| 577|Homo sapiens Athabascan SCID transcr... 80 3e-15
AF395749-1|AAM53257.1| 577|Homo sapiens Athabascan SCID transcr... 80 3e-15
AL360083-4|CAI40021.1| 84|Homo sapiens DNA cross-link repair 1... 62 5e-10
D42045-1|BAA07646.2| 1044|Homo sapiens KIAA0086 protein. 62 7e-10
BC062582-1|AAH62582.1| 1040|Homo sapiens DNA cross-link repair 1... 62 7e-10
BC013124-1|AAH13124.1| 1040|Homo sapiens DNA cross-link repair 1... 62 7e-10
AY607842-1|AAT09762.1| 1040|Homo sapiens DNA cross-link repair 1... 62 7e-10
AL592546-2|CAI12637.1| 1040|Homo sapiens DNA cross-link repair 1... 62 7e-10
BC029687-1|AAH29687.1| 532|Homo sapiens DNA cross-link repair 1... 56 4e-08
AY849379-1|AAV97812.1| 532|Homo sapiens DNA cross-link repair 1... 56 4e-08
AL137856-10|CAI19076.1| 532|Homo sapiens DNA cross-link repair ... 56 4e-08
AK024060-1|BAB14807.1| 532|Homo sapiens protein ( Homo sapiens ... 56 4e-08
AL360083-2|CAI40019.1| 117|Homo sapiens DNA cross-link repair 1... 54 1e-07
AK022872-1|BAB14284.1| 443|Homo sapiens protein ( Homo sapiens ... 54 2e-07
AL360083-6|CAI40023.1| 57|Homo sapiens DNA cross-link repair 1... 48 2e-05
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 44 2e-04
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 44 2e-04
BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein. 44 2e-04
AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and polyadeny... 44 2e-04
AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and polyadenyl... 44 2e-04
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 44 2e-04
AL139287-5|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 44 2e-04
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 44 2e-04
BC030988-1|AAH30988.1| 554|Homo sapiens Unknown (protein for IM... 37 0.028
BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and polyadenyl... 37 0.028
BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and polyadenyl... 37 0.028
AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and polyadenyl... 37 0.028
AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and polyadenyl... 37 0.028
AF017269-1|AAB70268.1| 379|Homo sapiens 73 kDA subunit of cleav... 37 0.028
AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein. 37 0.028
D86640-1|BAA13152.1| 402|Homo sapiens stac protein. 31 1.1
BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and polyadenyl... 31 1.1
BC020221-1|AAH20221.1| 402|Homo sapiens SH3 and cysteine rich d... 31 1.1
BC051871-1|AAH51871.1| 376|Homo sapiens chromosome 12 open read... 29 5.6
BC028904-1|AAH28904.1| 221|Homo sapiens C12orf10 protein protein. 29 5.6
AF289485-1|AAG17847.1| 376|Homo sapiens MYG1 homolog protein. 29 5.6
AF111805-1|AAL39007.1| 221|Homo sapiens MSTP024 protein. 29 5.6
>BC022254-1|AAH22254.1| 434|Homo sapiens DCLRE1C protein protein.
Length = 434
Score = 102 bits (245), Expect = 4e-22
Identities = 47/130 (36%), Positives = 75/130 (57%)
Query: 4 GSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKIN 63
G + + V +PAGHC GSVMFLF+ NN T+LYTGDFR+ + LH I
Sbjct: 101 GEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQ 160
Query: 64 TIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIY 123
++YLDTTF + F P R++ + ++ ++ W+ P + + L+ A YGYE++F +
Sbjct: 161 SVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLS 220
Query: 124 NILNMKTYVS 133
L ++ +V+
Sbjct: 221 EELGVQVHVN 230
>AL360083-8|CAI40025.1| 434|Homo sapiens DNA cross-link repair 1C
(PSO2 homolog, S. cerevisiae) protein.
Length = 434
Score = 102 bits (245), Expect = 4e-22
Identities = 47/130 (36%), Positives = 75/130 (57%)
Query: 4 GSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKIN 63
G + + V +PAGHC GSVMFLF+ NN T+LYTGDFR+ + LH I
Sbjct: 101 GEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQ 160
Query: 64 TIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIY 123
++YLDTTF + F P R++ + ++ ++ W+ P + + L+ A YGYE++F +
Sbjct: 161 SVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLS 220
Query: 124 NILNMKTYVS 133
L ++ +V+
Sbjct: 221 EELGVQVHVN 230
>AL360083-7|CAI40024.1| 692|Homo sapiens DNA cross-link repair 1C
(PSO2 homolog, S. cerevisiae) protein.
Length = 692
Score = 102 bits (245), Expect = 4e-22
Identities = 47/130 (36%), Positives = 75/130 (57%)
Query: 4 GSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKIN 63
G + + V +PAGHC GSVMFLF+ NN T+LYTGDFR+ + LH I
Sbjct: 101 GEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQ 160
Query: 64 TIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIY 123
++YLDTTF + F P R++ + ++ ++ W+ P + + L+ A YGYE++F +
Sbjct: 161 SVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLS 220
Query: 124 NILNMKTYVS 133
L ++ +V+
Sbjct: 221 EELGVQVHVN 230
>AJ296101-1|CAC37570.1| 692|Homo sapiens artemis protein protein.
Length = 692
Score = 102 bits (245), Expect = 4e-22
Identities = 47/130 (36%), Positives = 75/130 (57%)
Query: 4 GSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKIN 63
G + + V +PAGHC GSVMFLF+ NN T+LYTGDFR+ + LH I
Sbjct: 101 GEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQ 160
Query: 64 TIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIY 123
++YLDTTF + F P R++ + ++ ++ W+ P + + L+ A YGYE++F +
Sbjct: 161 SVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLS 220
Query: 124 NILNMKTYVS 133
L ++ +V+
Sbjct: 221 EELGVQVHVN 230
>AL360083-3|CAI40020.1| 572|Homo sapiens DNA cross-link repair 1C
(PSO2 homolog, S. cerevisiae) protein.
Length = 572
Score = 81.8 bits (193), Expect = 8e-16
Identities = 37/110 (33%), Positives = 62/110 (56%)
Query: 24 MFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRK 83
MFLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R+
Sbjct: 1 MFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSRE 60
Query: 84 DSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ + ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 61 ECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 110
>AF395752-1|AAM53260.1| 572|Homo sapiens Athabascan SCID transcript
variant 6 protein.
Length = 572
Score = 81.8 bits (193), Expect = 8e-16
Identities = 37/110 (33%), Positives = 62/110 (56%)
Query: 24 MFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRK 83
MFLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R+
Sbjct: 1 MFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSRE 60
Query: 84 DSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ + ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 61 ECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 110
>AF395751-1|AAM53259.1| 572|Homo sapiens Athabascan SCID transcript
variant 5 protein.
Length = 572
Score = 81.8 bits (193), Expect = 8e-16
Identities = 37/110 (33%), Positives = 62/110 (56%)
Query: 24 MFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRK 83
MFLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R+
Sbjct: 1 MFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSRE 60
Query: 84 DSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ + ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 61 ECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 110
>AF395748-1|AAM53256.1| 572|Homo sapiens Athabascan SCID transcript
variant 2 protein.
Length = 572
Score = 81.8 bits (193), Expect = 8e-16
Identities = 37/110 (33%), Positives = 62/110 (56%)
Query: 24 MFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRK 83
MFLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R+
Sbjct: 1 MFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSRE 60
Query: 84 DSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ + ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 61 ECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 110
>AF395747-1|AAM53255.1| 572|Homo sapiens Athabascan SCID transcript
variant 1 protein.
Length = 572
Score = 81.8 bits (193), Expect = 8e-16
Identities = 37/110 (33%), Positives = 62/110 (56%)
Query: 24 MFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRK 83
MFLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R+
Sbjct: 1 MFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSRE 60
Query: 84 DSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ + ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 61 ECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 110
>AK021422-1|BAB13820.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ11360 fis, clone HEMBA1000231. ).
Length = 577
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/109 (33%), Positives = 61/109 (55%)
Query: 25 FLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRKD 84
FLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R++
Sbjct: 7 FLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDRRFYQIPSREE 66
Query: 85 SIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 67 CLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 115
>DQ504427-1|ABF47101.1| 577|Homo sapiens DNA cross-link repair 1C
(PSO2 homolog, S. cerevisiae) protein.
Length = 577
Score = 79.8 bits (188), Expect = 3e-15
Identities = 36/109 (33%), Positives = 61/109 (55%)
Query: 25 FLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRKD 84
FLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R++
Sbjct: 7 FLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREE 66
Query: 85 SIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 67 CLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 115
>BC009185-1|AAH09185.1| 577|Homo sapiens DCLRE1C protein protein.
Length = 577
Score = 79.8 bits (188), Expect = 3e-15
Identities = 36/109 (33%), Positives = 61/109 (55%)
Query: 25 FLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRKD 84
FLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R++
Sbjct: 7 FLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREE 66
Query: 85 SIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 67 CLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 115
>AL360083-5|CAI40022.1| 577|Homo sapiens DNA cross-link repair 1C
(PSO2 homolog, S. cerevisiae) protein.
Length = 577
Score = 79.8 bits (188), Expect = 3e-15
Identities = 36/109 (33%), Positives = 61/109 (55%)
Query: 25 FLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRKD 84
FLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R++
Sbjct: 7 FLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREE 66
Query: 85 SIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 67 CLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 115
>AF395750-1|AAM53258.1| 577|Homo sapiens Athabascan SCID transcript
variant 4 protein.
Length = 577
Score = 79.8 bits (188), Expect = 3e-15
Identities = 36/109 (33%), Positives = 61/109 (55%)
Query: 25 FLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRKD 84
FLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R++
Sbjct: 7 FLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREE 66
Query: 85 SIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 67 CLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 115
>AF395749-1|AAM53257.1| 577|Homo sapiens Athabascan SCID transcript
variant 3 protein.
Length = 577
Score = 79.8 bits (188), Expect = 3e-15
Identities = 36/109 (33%), Positives = 61/109 (55%)
Query: 25 FLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRKD 84
FLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R++
Sbjct: 7 FLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREE 66
Query: 85 SIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVS 133
+ ++ ++ W+ P + + L+ A YGYE++F + L ++ +V+
Sbjct: 67 CLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN 115
>AL360083-4|CAI40021.1| 84|Homo sapiens DNA cross-link repair 1C
(PSO2 homolog, S. cerevisiae) protein.
Length = 84
Score = 62.5 bits (145), Expect = 5e-10
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 24 MFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRK 83
MFLF+ NN T+LYTGDFR+ + LH I ++YLDTTF + F P R+
Sbjct: 1 MFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSRE 60
Query: 84 DSIRMLVNHIKQWVDGEP 101
+ + ++ ++ W+ P
Sbjct: 61 ECLSGVLELVRSWITRSP 78
>D42045-1|BAA07646.2| 1044|Homo sapiens KIAA0086 protein.
Length = 1044
Score = 62.1 bits (144), Expect = 7e-10
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQT-ILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
+ V + A HC G+VM LF + N T IL+TGDFR +P S L D K++ +YL
Sbjct: 788 VKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADP---SMERSLLADQ---KVHMLYL 841
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ + + FP +++ IR +N + V P + T + G E VF I ++L
Sbjct: 842 DTTYCSPEY-TFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYS-IGKEKVFLAIADVLG 899
Query: 128 MKTYVSDDKW 137
K +S +K+
Sbjct: 900 SKVGMSQEKY 909
>BC062582-1|AAH62582.1| 1040|Homo sapiens DNA cross-link repair 1A
(PSO2 homolog, S. cerevisiae) protein.
Length = 1040
Score = 62.1 bits (144), Expect = 7e-10
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQT-ILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
+ V + A HC G+VM LF + N T IL+TGDFR +P S L D K++ +YL
Sbjct: 784 VKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADP---SMERSLLADQ---KVHMLYL 837
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ + + FP +++ IR +N + V P + T + G E VF I ++L
Sbjct: 838 DTTYCSPEY-TFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYS-IGKEKVFLAIADVLG 895
Query: 128 MKTYVSDDKW 137
K +S +K+
Sbjct: 896 SKVGMSQEKY 905
>BC013124-1|AAH13124.1| 1040|Homo sapiens DNA cross-link repair 1A
(PSO2 homolog, S. cerevisiae) protein.
Length = 1040
Score = 62.1 bits (144), Expect = 7e-10
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQT-ILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
+ V + A HC G+VM LF + N T IL+TGDFR +P S L D K++ +YL
Sbjct: 784 VKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADP---SMERSLLADQ---KVHMLYL 837
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ + + FP +++ IR +N + V P + T + G E VF I ++L
Sbjct: 838 DTTYCSPEY-TFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYS-IGKEKVFLAIADVLG 895
Query: 128 MKTYVSDDKW 137
K +S +K+
Sbjct: 896 SKVGMSQEKY 905
>AY607842-1|AAT09762.1| 1040|Homo sapiens DNA cross-link repair 1A
(PSO2 homolog, S. cerevisiae) protein.
Length = 1040
Score = 62.1 bits (144), Expect = 7e-10
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQT-ILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
+ V + A HC G+VM LF + N T IL+TGDFR +P S L D K++ +YL
Sbjct: 784 VKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADP---SMERSLLADQ---KVHMLYL 837
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ + + FP +++ IR +N + V P + T + G E VF I ++L
Sbjct: 838 DTTYCSPEY-TFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYS-IGKEKVFLAIADVLG 895
Query: 128 MKTYVSDDKW 137
K +S +K+
Sbjct: 896 SKVGMSQEKY 905
>AL592546-2|CAI12637.1| 1040|Homo sapiens DNA cross-link repair 1A
(PSO2 homolog, S. cerevisiae) protein.
Length = 1040
Score = 62.1 bits (144), Expect = 7e-10
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQT-ILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
+ V + A HC G+VM LF + N T IL+TGDFR +P S L D K++ +YL
Sbjct: 784 VKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADP---SMERSLLADQ---KVHMLYL 837
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ + + FP +++ IR +N + V P + T + G E VF I ++L
Sbjct: 838 DTTYCSPEY-TFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYS-IGKEKVFLAIADVLG 895
Query: 128 MKTYVSDDKW 137
K +S +K+
Sbjct: 896 SKVGMSQEKY 905
>BC029687-1|AAH29687.1| 532|Homo sapiens DNA cross-link repair 1B
(PSO2 homolog, S. cerevisiae) protein.
Length = 532
Score = 56.0 bits (129), Expect = 4e-08
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MDDGSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPI 60
+D+ + + V + A HC GSVMFLFE TILYTGDFR P + +
Sbjct: 82 LDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEPAL----TLGK 137
Query: 61 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ 95
+I+T+YLD T N + P R+++ +V I++
Sbjct: 138 QIHTLYLDNTNCNPAL-VLPSRQEAAHQIVQLIRK 171
>AY849379-1|AAV97812.1| 532|Homo sapiens DNA cross-link repair 1B
(PSO2 homolog, S. cerevisiae) protein.
Length = 532
Score = 56.0 bits (129), Expect = 4e-08
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MDDGSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPI 60
+D+ + + V + A HC GSVMFLFE TILYTGDFR P + +
Sbjct: 82 LDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEPAL----TLGK 137
Query: 61 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ 95
+I+T+YLD T N + P R+++ +V I++
Sbjct: 138 QIHTLYLDNTNCNPAL-VLPSRQEAAHQIVQLIRK 171
>AL137856-10|CAI19076.1| 532|Homo sapiens DNA cross-link repair 1B
(PSO2 homolog, S. cerevisiae) protein.
Length = 532
Score = 56.0 bits (129), Expect = 4e-08
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MDDGSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPI 60
+D+ + + V + A HC GSVMFLFE TILYTGDFR P + +
Sbjct: 82 LDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEPAL----TLGK 137
Query: 61 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ 95
+I+T+YLD T N + P R+++ +V I++
Sbjct: 138 QIHTLYLDNTNCNPAL-VLPSRQEAAHQIVQLIRK 171
>AK024060-1|BAB14807.1| 532|Homo sapiens protein ( Homo sapiens
cDNA FLJ13998 fis, clone Y79AA1002229, weakly similar to
DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1. ).
Length = 532
Score = 56.0 bits (129), Expect = 4e-08
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MDDGSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPI 60
+D+ + + V + A HC GSVMFLFE TILYTGDFR P + +
Sbjct: 82 LDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEPAL----TLGK 137
Query: 61 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ 95
+I+T+YLD T N + P R+++ +V I++
Sbjct: 138 QIHTLYLDNTNCNPAL-VLPSRQEAAHQIVQLIRK 171
>AL360083-2|CAI40019.1| 117|Homo sapiens DNA cross-link repair 1C
(PSO2 homolog, S. cerevisiae) protein.
Length = 117
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 53 LHKDNMPIKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSAR 112
LH I ++YLDTTF + F P R++ + ++ ++ W+ P + + L+ A
Sbjct: 4 LHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAA 63
Query: 113 YGYEFVFNEIYNILNMKTYVS 133
YGYE++F + L ++ +V+
Sbjct: 64 YGYEYLFTNLSEELGVQVHVN 84
>AK022872-1|BAB14284.1| 443|Homo sapiens protein ( Homo sapiens
cDNA FLJ12810 fis, clone NT2RP2002464, weakly similar
to DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1. ).
Length = 443
Score = 54.0 bits (124), Expect = 2e-07
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLD 68
+ V + A HC GSVMFLFE TILYTGDFR P + + +I+T+YLD
Sbjct: 1 MTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEPAL----TLGKQIHTLYLD 56
Query: 69 TTFQNESFDNFPRRKDSIRMLVNHIKQ 95
T N + P R+++ +V I++
Sbjct: 57 NTNCNPAL-VLPSRQEAAHQIVQLIRK 82
>AL360083-6|CAI40023.1| 57|Homo sapiens DNA cross-link repair 1C
(PSO2 homolog, S. cerevisiae) protein.
Length = 57
Score = 47.6 bits (108), Expect = 2e-05
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 25 FLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTF 71
FLF+ NN T+LYTGDFR+ + LH I ++YLDTTF
Sbjct: 7 FLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTF 53
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE 45
L +K AGH LG+ MF ++ +++++YTGD+ M P+
Sbjct: 148 LEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 184
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE 45
L +K AGH LG+ MF ++ +++++YTGD+ M P+
Sbjct: 148 LEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 184
>BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein.
Length = 473
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE 45
L +K AGH LG+ MF ++ +++++YTGD+ M P+
Sbjct: 21 LEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 57
>AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 283
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE 45
L +K AGH LG+ MF ++ +++++YTGD+ M P+
Sbjct: 215 LEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 251
>AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 523
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE 45
L +K AGH LG+ MF ++ +++++YTGD+ M P+
Sbjct: 71 LEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 107
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE 45
L +K AGH LG+ MF ++ +++++YTGD+ M P+
Sbjct: 175 LEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 211
>AL139287-5|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE 45
L +K AGH LG+ MF ++ +++++YTGD+ M P+
Sbjct: 62 LEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 98
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar
to CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100
KD SUBUNIT. ).
Length = 499
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE 45
L +K AGH LG+ MF ++ +++++YTGD+ M P+
Sbjct: 47 LEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 83
>BC030988-1|AAH30988.1| 554|Homo sapiens Unknown (protein for
IMAGE:4806442) protein.
Length = 554
Score = 36.7 bits (81), Expect = 0.028
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ EI +LYTGDF
Sbjct: 156 AGHVLGAAMFMIEIAGVKLLYTGDF 180
>BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 36.7 bits (81), Expect = 0.028
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ EI +LYTGDF
Sbjct: 156 AGHVLGAAMFMIEIAGVKLLYTGDF 180
>BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 36.7 bits (81), Expect = 0.028
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ EI +LYTGDF
Sbjct: 156 AGHVLGAAMFMIEIAGVKLLYTGDF 180
>AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa variant
protein.
Length = 684
Score = 36.7 bits (81), Expect = 0.028
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ EI +LYTGDF
Sbjct: 156 AGHVLGAAMFMIEIAGVKLLYTGDF 180
>AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and
polyadenylation specificity factor 73 kDa subunit
protein.
Length = 684
Score = 36.7 bits (81), Expect = 0.028
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ EI +LYTGDF
Sbjct: 156 AGHVLGAAMFMIEIAGVKLLYTGDF 180
>AF017269-1|AAB70268.1| 379|Homo sapiens 73 kDA subunit of
cleavage and polyadenylation specificity factor
protein.
Length = 379
Score = 36.7 bits (81), Expect = 0.028
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ EI +LYTGDF
Sbjct: 37 AGHVLGAAMFMIEIAGVKLLYTGDF 61
>AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein.
Length = 684
Score = 36.7 bits (81), Expect = 0.028
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ EI +LYTGDF
Sbjct: 156 AGHVLGAAMFMIEIAGVKLLYTGDF 180
>D86640-1|BAA13152.1| 402|Homo sapiens stac protein.
Length = 402
Score = 31.5 bits (68), Expect = 1.1
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 37 TGDFRMNPENISAFGQLHKDNMPIKINT-IYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ 95
T DFR +NI+ G L KD P+++NT + L E+ D R D I +L + +
Sbjct: 264 TDDFRDPAKNINHQGSLSKD--PLQMNTYVALYKFVPQENEDLEMRPGDIITLLEDSNED 321
Query: 96 WVDGEPTNRI 105
W G+ +RI
Sbjct: 322 WWKGKIQDRI 331
>BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and
polyadenylation specific factor 2, 100kDa protein.
Length = 782
Score = 31.5 bits (68), Expect = 1.1
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 9 LNVKTIPAGHCLGSVMF-LFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
L++ +PAGH +G ++ + + + I+Y DF E L + P + T
Sbjct: 144 LSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSF 203
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSAR 112
+ T+ PRRK L+ ++ + + G+ IA+ T+ R
Sbjct: 204 NATYVQ------PRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGR 242
>BC020221-1|AAH20221.1| 402|Homo sapiens SH3 and cysteine rich
domain protein.
Length = 402
Score = 31.5 bits (68), Expect = 1.1
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 37 TGDFRMNPENISAFGQLHKDNMPIKINT-IYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ 95
T DFR +NI+ G L KD P+++NT + L E+ D R D I +L + +
Sbjct: 264 TDDFRDPAKNINHQGSLSKD--PLQMNTYVALYKFVPQENEDLEMRPGDIITLLEDSNED 321
Query: 96 WVDGEPTNRI 105
W G+ +RI
Sbjct: 322 WWKGKIQDRI 331
>BC051871-1|AAH51871.1| 376|Homo sapiens chromosome 12 open reading
frame 10 protein.
Length = 376
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 70 TFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSAR 112
T ++ ++NF D++ N I QW +GEP + SAR
Sbjct: 159 TLYDKMYENFVEEVDAVD---NGISQWAEGEPRYALTTTLSAR 198
>BC028904-1|AAH28904.1| 221|Homo sapiens C12orf10 protein protein.
Length = 221
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 70 TFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSAR 112
T ++ ++NF D++ N I QW +GEP + SAR
Sbjct: 4 TLYDKMYENFVEEVDAVD---NGISQWAEGEPRYALTTTLSAR 43
>AF289485-1|AAG17847.1| 376|Homo sapiens MYG1 homolog protein.
Length = 376
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 70 TFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSAR 112
T ++ ++NF D++ N I QW +GEP + SAR
Sbjct: 159 TLYDKMYENFVEEVDAVD---NGISQWAEGEPRYALTTTLSAR 198
>AF111805-1|AAL39007.1| 221|Homo sapiens MSTP024 protein.
Length = 221
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 70 TFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSAR 112
T ++ ++NF D++ N I QW +GEP + SAR
Sbjct: 4 TLYDKMYENFVEEVDAVD---NGISQWAEGEPRYALTTTLSAR 43
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,492,439
Number of Sequences: 224733
Number of extensions: 866373
Number of successful extensions: 1072
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1029
Number of HSP's gapped (non-prelim): 50
length of query: 141
length of database: 73,234,838
effective HSP length: 83
effective length of query: 58
effective length of database: 54,581,999
effective search space: 3165755942
effective search space used: 3165755942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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